AMTR_s00003p00271440 (Amborella trichopoda)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AMTR_s00003p00271440 T266135_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK28187.1
M01286_2.00
Cannabis sativa
TACCTACC

GGTAGGTA
PBM
Lambert et al.(2019)
pTH11305
0.799 0.935
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH

DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.788 0.839
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH

DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.788 0.839
AtMYB93
M07020_2.00
Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH

DDDDDDDDRKTWGKTRRRNHD
Dap-seq
OMalley et al.(2016)
MYB93_col_a
0.785 0.839
AtMYB93
M07021_2.00
Arabidopsis thaliana
NNHNBYYYAMCWAMY

RKTWGKTRRRVNDNN
Dap-seq
OMalley et al.(2016)
MYB93_colamp_a
0.785 0.839
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY

RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.780 0.774
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH

DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.780 0.774
AtMYB74
M07104_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH

DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB74_colamp_a
0.772 0.925
AtMYB74
M07105_2.00
Arabidopsis thaliana
BYHYACCTAMYHHH

DDDRKTAGGTRDRV
Dap-seq
OMalley et al.(2016)
MYB74_col
0.772 0.925
MYB106
M11040_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.749 0.785
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH

DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.731 0.774
AtMYB41
M07109_2.00
Arabidopsis thaliana
DHDBBYYACCTAMYW

WRKTAGGTRRVVHDH
Dap-seq
OMalley et al.(2016)
MYB41_col_a
0.723 0.892
MYB49
M07140_2.00
Arabidopsis thaliana
HDBBYYACCWAMYWH

DWRKTWGGTRRVVHD
Dap-seq
OMalley et al.(2016)
MYB49_col_a
0.684 0.828
MYB49
M07141_2.00
Arabidopsis thaliana
NYYYACCTAMYWHN

NDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB49_colamp_a
0.684 0.828
ATY53
M07078_2.00
Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN

NNNNNNNNDDHGKTWGGTRVR
Dap-seq
OMalley et al.(2016)
MYB67_col_a
0.665 0.667
MYB58
M07005_2.00
Arabidopsis thaliana
NNYYYACCWAMCHHH

DDDGKTWGGTRRRNN
Dap-seq
OMalley et al.(2016)
MYB58_col_a
0.661 0.699
MYB58
M07006_2.00
Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH

DNNNNDDDGKTWGGTRDRNND
Dap-seq
OMalley et al.(2016)
MYB58_colamp_a
0.661 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN03536 Myb 14 61
ERN03536 Myb 67 112

Links

Other Myb/SANT family TFs
Other Amborella trichopoda TFs

Invalid Input OrderBy

883 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action