AMTR_s00024p00137930 (Amborella trichopoda)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AMTR_s00024p00137930 T266166_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN

NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.797 0.860
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD

HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.797 0.860
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW

WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.795 0.839
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH

DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.795 0.839
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH

DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.725 0.774
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD

HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.725 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN11084 Myb 4 50
ERN11084 Myb 56 101

Links

Other Myb/SANT family TFs
Other Amborella trichopoda TFs

381 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LPERR09G14110 Leersia perrieri LPERR09G14110 N 0.000
GSMUA_Achr1G14960_001 Musa acuminata GSMUA_Achr1G14960_001 I 0.000
GSMUA_Achr3G00570_001 Musa acuminata GSMUA_Achr3G00570_001 I 0.000
GSMUA_Achr8G34160_001 Musa acuminata GSMUA_Achr8G34160_001 I 0.000
OBART09G18350 Oryza barthii OBART09G18350 N 0.000
OB09G24850 Oryza brachyantha OB09G24850 N 0.000
ORGLA09G0144900 Oryza glaberrima ORGLA09G0144900 N 0.000
OGLUM09G18910 Oryza glumaepatula OGLUM09G18910 N 0.000
BGIOSGA029336 Oryza indica BGIOSGA029336 N 0.000
OLONG_021805 Oryza longistaminata OLONG_021805 N 0.000
OMERI09G13880 Oryza meridionalis OMERI09G13880 N 0.000
ONIVA09G19470 Oryza nivara ONIVA09G19470 N 0.000
ORUFI09G19820 Oryza rufipogon ORUFI09G19820 N 0.000