CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AT1G13880
(
Arabidopsis thaliana
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
AT1G13880
T266326_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G13880.1
Myb
231
280
ARLTEDEEDLFHEIVYSNPVSMDRDFWKHLKSAFPSRTMKEIVSYYFNVF
AT1G13880.2
Myb
241
290
ARLTEDEEDLFHEIVYSNPVSMDRDFWKHLKSAFPSRTMKEIVSYYFNVF
AT1G13880.3
Myb
232
281
ARLTEDEEDLFHEIVYSNPVSMDRDFWKHLKSAFPSRTMKEIVSYYFNVF
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis thaliana
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh2_kg.1__1502__AT1G13880.1
Arabidopsis lyrata
fgenesh2_kg.1__1502__AT1G13880.1
N
0.857
Bra016722
Brassica rapa
Bra016722
N
0.814
Carubv10009267m.g
Capsella rubella
Carubv10009267m.g
N
0.812
Bra026876
Brassica rapa
Bra026876
N
0.803
Bostr.13671s0067
Boechera stricta
Bostr.13671s0067
N
0.802
Bo8g065710
Brassica oleracea
Bo8g065710
N
0.796
Bra041096
Brassica rapa
Bra041096
N
0.789
Bo7g081200
Brassica oleracea
Bo7g081200
N
0.789
Thhalv10005386m.g
Eutrema salsugineum
Thhalv10005386m.g
N
0.767
Lus10004658.g
Linum usitatissimum
Lus10004658.g
N
0.726
Cagra.3501s0113
Capsella grandiflora
Cagra.3501s0113
N
0.723
Lus10037097.g
Linum usitatissimum
Lus10037097.g
N
0.722
Bo8g107180
Brassica oleracea
Bo8g107180
N
0.718
Carubv10019121m.g
Capsella rubella
Carubv10019121m.g
N
0.708
Cagra.3545s0005
Capsella grandiflora
Cagra.3545s0005
N
0.708
fgenesh2_kg.5__246__AT2G03470.1
Arabidopsis lyrata
fgenesh2_kg.5__246__AT2G03470.1
N
0.700
AT2G03470
Arabidopsis thaliana
AT2G03470
N
0.700
Ciclev10019841m.g
Citrus clementina
Ciclev10019841m.g
N
0.686
Lus10036888.g
Linum usitatissimum
Lus10036888.g
N
0.683
Bostr.0556s0170
Boechera stricta
Bostr.0556s0170
N
0.682