TRFL5 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT1G15720 T266329_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Arabidopsis thaliana myb family transcription factor (At1g15720)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRFL5
M02285_2.00		 Arabidopsis thaliana
WGCCCTAN
NTAGGGCW		 PBM
Weirauch et al.(2014)
pTH7099		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02285_2.00 Myb 52 100

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G15720.1 Myb 339 387

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7128s0187 Boechera stricta Bostr.7128s0187 I 0.847
TRFL5 Arabidopsis lyrata fgenesh2_kg.1__1721__AT1G15720.1 I 0.845
Cagra.2238s0052 Capsella grandiflora Cagra.2238s0052 I 0.825
Carubv10011791m.g Capsella rubella Carubv10011791m.g I 0.825
Thhalv10013531m.g Eutrema salsugineum Thhalv10013531m.g I 0.774
AT5G58340 Arabidopsis thaliana AT5G58340 I 0.774
Al_scaffold_0008_2302 Arabidopsis lyrata Al_scaffold_0008_2302 I 0.774
Bo9g134990 Brassica oleracea Bo9g134990 I 0.774
Bra039470 Brassica rapa Bra039470 I 0.763
Bo5g146770 Brassica oleracea Bo5g146770 I 0.743
Thhalv10022421m.g Eutrema salsugineum Thhalv10022421m.g I 0.735