CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AT1G17520
(
Arabidopsis thaliana
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
AT1G17520
T266332_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development.MPK6 appears to be associated with the microsomal compartment and may be involved in mediating secretory processes.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G72740
M07033_2.00
Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD
Dap-seq
OMalley et al.(2016)
AT1G72740_col_a
0.876
0.957
AT1G72740
M07034_2.00
Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND
Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a
0.876
0.957
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN
NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.837
0.809
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.750
0.723
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG
CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.695
0.745
TRB2
M02314_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Weirauch et al.(2014)
pTH7094
0.662
0.723
TRB2
M01083_2.00
Arabidopsis thaliana
HRMCCTAR
YTAGGKYD
PBM
Sullivan et al.(2014)
pTH7260
0.662
0.723
TRB2
M07157_2.00
Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD
Dap-seq
OMalley et al.(2016)
TBP3_col_a
0.662
0.723
TRB2
M07158_2.00
Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD
Dap-seq
OMalley et al.(2016)
TBP3_colamp_a
0.662
0.723
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G17520.1
Myb
5
57
KLKWTAEEEEALLAGVRKHGPGKWKNILRDPELAEQLSSRSNIDLKDKWRNLS
AT1G17520.2
Myb
5
57
KLKWTAEEEEALLAGVRKHGPGKWKNILRDPELAEQLSSRSNIDLKDKWRNLS
AT1G17520.3
Myb
5
57
KLKWTAEEEEALLAGVRKHGPGKWKNILRDPELAEQLSSRSNIDLKDKWRNLS
AT1G17520.4
Myb
5
57
KLKWTAEEEEALLAGVRKHGPGKWKNILRDPELAEQLSSRSNIDLKDKWRNLS
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis thaliana
TFs
214 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy