CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RVE7
(
Arabidopsis thaliana
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
AT1G18330
T266334_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RVE7
M01069_2.00
Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN
PBM
Sullivan et al.(2014)
pTH7081
(Direct)
(Direct)
RVE7
M02286_2.00
Arabidopsis thaliana
NDARTATCH
DGATAYTHN
PBM
Weirauch et al.(2014)
pTH7277
(Direct)
(Direct)
RVE7
M07008_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
EPR1_colamp_a
(Direct)
(Direct)
RVE7
M07009_2.00
Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN
Dap-seq
OMalley et al.(2016)
EPR1_col
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RVE7L
M07071_2.00
Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN
Dap-seq
OMalley et al.(2016)
AT3G10113_col_a
0.909
1.000
LHY
M06997_2.00
Arabidopsis thaliana
NWAAATATCT
AGATATTTWN
Dap-seq
OMalley et al.(2016)
LHY1_col_a
0.800
0.783
LHY
M06998_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LHY1_colamp_a
0.800
0.783
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN
NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.794
0.848
OS08G0157600
M02330_2.00
Oryza sativa
DNRTATCHN
NDGATAYNH
PBM
Weirauch et al.(2014)
pTH7793
0.790
0.783
CCA1
M00875_2.00
Arabidopsis thaliana
NDNRWATCN
NGATWYNHN
PBM
Franco-Zorrilla et al.(2014)
CCA1
0.744
0.739
CCA1
M11039_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CCA1_Q5
0.744
0.739
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT
AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.703
0.739
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.703
0.739
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW
WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.703
0.739
For this family, TFs with SR scores >
0.661
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01069_2.00
Myb
50
95
REKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQIRSHAQKFF
M02286_2.00
Myb
50
95
REKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQIRSHAQKFF
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G18330.1
Myb
50
95
REKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQIRSHAQKFF
AT1G18330.2
Myb
76
121
REKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQIRSHAQKFF
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis thaliana
TFs
275 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy