AT1G49010 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT1G49010 T266348_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT1G49010
M01269_2.00
Arabidopsis thaliana
NNYWATCNN

NNGATWRNN
PBM
Lambert et al.(2019)
pTH11535
(Direct) (Direct)
AT1G49010
M07022_2.00
Arabidopsis thaliana
NHHWWYCTTATCYWH

DWRGATAAGRWWDDN
Dap-seq
OMalley et al.(2016)
At1g49010_col_a
(Direct) (Direct)
AT1G49010
M07023_2.00
Arabidopsis thaliana
WWYCTTATCYWHWHH

DDWDWRGATAAGRWW
Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK19621.1
M01280_2.00
Cannabis sativa
NNTTATCYN

NRGATAANN
PBM
Lambert et al.(2019)
pTH10140
0.712 0.824
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01269_2.00 Myb 135 180

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G49010.1 Myb 135 180

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
scaffold_104540.1 Arabidopsis lyrata scaffold_104540.1 I 0.895
Bostr.26675s0270 Boechera stricta Bostr.26675s0270 I 0.880
Carubv10009808m.g Capsella rubella Carubv10009808m.g I 0.852
Cagra.1613s0002 Capsella grandiflora Cagra.1613s0002 I 0.852
Thhalv10011650m.g Eutrema salsugineum Thhalv10011650m.g I 0.826
Bo6g018000 Brassica oleracea Bo6g018000 I 0.791
Bra018772 Brassica rapa Bra018772 I 0.783
Ciclev10021342m.g Citrus clementina Ciclev10021342m.g I 0.765
TCM_012262 Theobroma cacao TCM_012262 I 0.764
SapurV1A.0583s0020 Salix purpurea SapurV1A.0583s0020 I 0.761
Solyc03g119740.2 Solanum lycopersicum Solyc03g119740.2 I 0.756
Bra014169 Brassica rapa Bra014169 I 0.754
Eucgr.K02659 Eucalyptus grandis Eucgr.K02659 I 0.753
POPTR_0012s05720 Populus trichocarpa POPTR_0012s05720 I 0.736
Bo00685s060 Brassica oleracea Bo00685s060 I 0.736
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.725
GLYMA05G07980 Glycine max GLYMA05G07980 I 0.723
30174.m008717 Ricinus communis 30174.m008717 I 0.721
Ca_06612 Cicer arietinum Ca_06612 I 0.714
PK19621.1 Cannabis sativa PK19621.1 D 0.712
chr4.LjB15O07.50.nc Lotus japonicus chr4.LjB15O07.50.nc I 0.709
GLYMA17G13010 Glycine max GLYMA17G13010 I 0.703
MTR_4g111975 Medicago truncatula MTR_4g111975 I 0.697
gene26214-v1.0-hybrid Fragaria vesca gene26214-v1.0-hybrid I 0.695
PRUPE_ppa009092mg Prunus persica PRUPE_ppa009092mg I 0.690
Pm030197 Prunus mume Pm030197 I 0.690
VIT_17s0000g04130 Vitis vinifera VIT_17s0000g04130 I 0.665