AT1G49010 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT1G49010 T266348_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT1G49010
M01269_2.00
Arabidopsis thaliana
NNYWATCNN

NNGATWRNN
PBM
Lambert et al.(2019)
pTH11535
(Direct) (Direct)
AT1G49010
M07022_2.00
Arabidopsis thaliana
NHHWWYCTTATCYWH

DWRGATAAGRWWDDN
Dap-seq
OMalley et al.(2016)
At1g49010_col_a
(Direct) (Direct)
AT1G49010
M07023_2.00
Arabidopsis thaliana
WWYCTTATCYWHWHH

DDWDWRGATAAGRWW
Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK19621.1
M01280_2.00
Cannabis sativa
NNTTATCYN

NRGATAANN
PBM
Lambert et al.(2019)
pTH10140
0.712 0.824
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01269_2.00 Myb 135 180

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G49010.1 Myb 135 180

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACRE_023370 Acremonium chrysogenum ACRE_023370 I 0.000
ACLA_006040 Aspergillus clavatus CADACLAG00000456 I 0.000
CADAFLAG00000147 Aspergillus flavus CADAFLAG00000147 I 0.000
AFUA_7G04340 Aspergillus fumigatus CADAFUAG00009520 I 0.000
EURHEDRAFT_504476 Aspergillus ruber EURHEDRAFT_504476 I 0.000
M437DRAFT_51916 Aureobasidium melanogenum M437DRAFT_51916 I 0.000
M438DRAFT_282671 Aureobasidium pullulans M438DRAFT_282671 I 0.000
AUEXF2481DRAFT_66904 Aureobasidium subglaciale AUEXF2481DRAFT_66904 I 0.000
BDDG_01787 Blastomyces dermatitidis BDDG_01787 N 0.000
Bcin14g04190 Botrytis cinerea Bcin14g04190 I 0.000
PVAR5_5630 Byssochlamys spectabilis PVAR5_5630 I 0.000
A1O1_03877 Capronia coronata A1O1_03877 I 0.000
A1O3_06500 Capronia epimyces A1O3_06500 I 0.000
PV04_10883 Capronia semiimmersa PV04_10883 N 0.000
CHGG_08436 Chaetomium globosum CHGG_08436 I 0.000
Z519_05910 Cladophialophora bantiana Z519_05910 N 0.000
G647_08456 Cladophialophora carrionii G647_08456 N 0.000
PV07_08392 Cladophialophora immunda PV07_08392 N 0.000
A1O5_07338 Cladophialophora psammophila A1O5_07338 N 0.000
CPUR_05595 Claviceps purpurea CPUR_05595 I 0.000
W97_06337 Coniosporium apollinis W97_06337 I 0.000
estExt_Genewise1Plus.C_71129 Cryphonectria parasitica estExt_Genewise1Plus.C_71129 I 0.000
HMPREF1541_02573 Cyphellophora europaea HMPREF1541_02573 I 0.000
HMPREF1541_03984 Cyphellophora europaea HMPREF1541_03984 I 0.000
DOTSEDRAFT_147895 Dothistroma septosporum DOTSEDRAFT_147895 I 0.000
A1O9_11755 Exophiala aquamarina A1O9_11755 N 0.000
HMPREF1120_08967 Exophiala dermatitidis HMPREF1120_08967 I 0.000
PV10_06264 Exophiala mesophila PV10_06264 I 0.000
PV06_07241 Exophiala oligosperma PV06_07241 I 0.000
PV11_05624 Exophiala sideris PV11_05624 N 0.000
PV08_06607 Exophiala spinifera PV08_06607 I 0.000
PV05_03690 Exophiala xenobiotica PV05_03690 I 0.000
FFUJ_07577 Fusarium fujikuroi FFUJ_07577 I 0.000
FGRRES_03246 Fusarium graminearum FGRRES_03246 N 0.000
FPSE_07627 Fusarium pseudograminearum FPSE_07627 N 0.000
CMQ_2742 Grosmannia clavigera CMQ_2742 I 0.000
HCBG_07667 Histoplasma capsulatum HCBG_07667 N 0.000
MPH_04203 Macrophomina phaseolina MPH_04203 I 0.000
MGG_08314 Magnaporthe oryzae MGG_08314 I 0.000
MBR_09269 Metarhizium brunneum MBR_09269 I 0.000
MGU_09322 Metarhizium guizhouense MGU_09322 I 0.000
MAJ_06844 Metarhizium majus MAJ_06844 I 0.000
X797_008340 Metarhizium robertsii X797_008340 I 0.000
MCYG_07324 Microsporum canis MCYG_07324 I 0.000
MGYG_04823 Microsporum gypseum MGYG_04823 I 0.000
MYCTH_53224 Myceliophthora thermophila MYCTH_53224 I 0.000
UCRNP2_1235 Neofusicoccum parvum UCRNP2_1235 I 0.000
NFIA_025310 Neosartorya fischeri CADNFIAG00002365 I 0.000
F503_03368 Ophiostoma piceae uamh F503_03368 I 0.000
Pc21g04390 Penicillium chrysogenum Pc21g04390 I 0.000
PDIP_82350 Penicillium digitatum PDIP_82350 I 0.000
PEX1_020150 Penicillium expansum PEX1_020150 I 0.000
PMAA_069200 Penicillium marneffei PMAA_069200 I 0.000
PDE_00826 Penicillium oxalicum PDE_00826 I 0.000
PCH_Pc21g04390 Penicillium rubens PCH_Pc21g04390 I 0.000
U727_0043014821 Penicillium solitum U727_0043014821 I 0.000
Z518_07460 Rhinocladiella mackenziei Z518_07460 I 0.000
SAPIO_CDS8512 Scedosporium apiospermum SAPIO_CDS8512 I 0.000
SEPMUDRAFT_124778 Sphaerulina musiva SEPMUDRAFT_124778 I 0.000
SPBR_02256 Sporothrix brasiliensis SPBR_02256 N 0.000
HMPREF1624_02151 Sporothrix schenckii HMPREF1624_02151 N 0.000
PMAA_069200 Talaromyces marneffei PMAA_069200 I 0.000
TSTA_089370 Talaromyces stipitatus TSTA_089370 I 0.000
VHEMI08742 Torrubiella hemipterigena VHEMI08742 I 0.000
TRIREDRAFT_79871 Trichoderma reesei TRIREDRAFT_79871 I 0.000
TEQG_00411 Trichophyton equinum TEQG_00411 I 0.000
H101_02307 Trichophyton interdigitale H101_02307 I 0.000
H102_06334 Trichophyton rubrum H102_06334 I 0.000
H105_06373 Trichophyton soudanense H105_06373 I 0.000
TESG_04385 Trichophyton tonsurans TESG_04385 I 0.000
UV8b_3133 Ustilaginoidea virens UV8b_3133 I 0.000
VDAG_06702 Verticillium dahliae VDAG_06702 I 0.000