AT1G72740 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT1G72740 T266370_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a transcription factor AtTCP14 that regulates seed germination. AtTCP14 shows elevated expression level just prior to germination. AtTCP14 is predominantly expressed in the vascular tissue of the embryo, and affects gene expression in radicles in a non-cell-autonomous manner.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G72740
M07033_2.00		 Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a		 (Direct) (Direct)
AT1G72740
M07034_2.00		 Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.804 0.766
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.728 0.702
PK06103.1
M02348_2.00 		Cannabis sativa
TGCCCTAG
CTAGGGCA		 PBM
Weirauch et al.(2014)
pTH9649 		0.673 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G72740.1 Myb 5 57
AT1G72740.2 Myb 5 57

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I 0.901
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I 0.876
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I 0.876
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.876
Cagra.1013s0027 Capsella grandiflora Cagra.1013s0027 I 0.875
Carubv10020636m.g Capsella rubella Carubv10020636m.g I 0.875
fgenesh2_kg.2__1540__AT1G72740.1 Arabidopsis lyrata fgenesh2_kg.2__1540__AT1G72740.1 I 0.875
Bo8g067280 Brassica oleracea Bo8g067280 I 0.842
Bra016598 Brassica rapa Bra016598 I 0.842
TCM_029078 Theobroma cacao TCM_029078 I 0.840
orange1.1g023740m.g Citrus sinensis orange1.1g023740m.g I 0.837
Thhalv10008387m.g Eutrema salsugineum Thhalv10008387m.g I 0.837
Carubv10009890m.g Capsella rubella Carubv10009890m.g I 0.837
Bra016037 Brassica rapa Bra016037 I 0.837
Bo6g116150 Brassica oleracea Bo6g116150 I 0.837
Ciclev10026245m.g Citrus clementina Ciclev10026245m.g I 0.837
Bo8g104830 Brassica oleracea Bo8g104830 I 0.832
Pm013309 Prunus mume Pm013309 I 0.830
PRUPE_ppa016498mg Prunus persica PRUPE_ppa016498mg I 0.830
29706.m001328 Ricinus communis 29706.m001328 I 0.828
cassava34930.m1 Manihot esculenta cassava34930.m1 I 0.828
evm.TU.supercontig_106.31 Carica papaya evm.TU.supercontig_106.31 I 0.828
Bostr.7128s0363 Boechera stricta Bostr.7128s0363 I 0.827
Bostr.10273s0077 Boechera stricta Bostr.10273s0077 I 0.824
Bo5g023860 Brassica oleracea Bo5g023860 I 0.824
Bra025967 Brassica rapa Bra025967 I 0.824
Bra030894 Brassica rapa Bra030894 I 0.815
Bo3g184590 Brassica oleracea Bo3g184590 I 0.815
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I 0.808
OMERI05G07460 Oryza meridionalis OMERI05G07460 I 0.804
ONIVA01G32190 Oryza nivara ONIVA01G32190 I 0.804
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I 0.804
BGIOSGA004300 Oryza indica BGIOSGA004300 I 0.804
OLONG_008666 Oryza longistaminata OLONG_008666 I 0.804
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I 0.804
OB01G37330 Oryza brachyantha OB01G37330 I 0.804
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I 0.804
OPUNC01G28080 Oryza punctata OPUNC01G28080 I 0.804
OS01G0708000 Oryza sativa OS01G0708000 D 0.804
OBART01G28260 Oryza barthii OBART01G28260 I 0.804
Bra030992 Brassica rapa Bra030992 I 0.803
Cucsa.341020 Cucumis sativus Cucsa.341020 I 0.788
Cla012798 Citrullus lanatus Cla012798 I 0.788
GLYMA08G20270 Glycine max GLYMA08G20270 I 0.770
GLYMA07G00930 Glycine max GLYMA07G00930 I 0.770
Eucgr.J02841 Eucalyptus grandis Eucgr.J02841 I 0.766
Carubv10009763m.g Capsella rubella Carubv10009763m.g I 0.757
Lus10040111.g Linum usitatissimum Lus10040111.g I 0.757
Lus10030935.g Linum usitatissimum Lus10030935.g I 0.757
Cagra.1262s0035 Capsella grandiflora Cagra.1262s0035 I 0.757
Lus10027621.g Linum usitatissimum Lus10027621.g I 0.757
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I 0.750
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I 0.750
SELMODRAFT_49297 Selaginella moellendorffii SELMODRAFT_49297 I 0.748
SELMODRAFT_49296 Selaginella moellendorffii SELMODRAFT_49296 I 0.748
evm.TU.supercontig_25.81 Carica papaya evm.TU.supercontig_25.81 I 0.746
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I 0.743
Ciclev10009173m.g Citrus clementina Ciclev10009173m.g I 0.743
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I 0.742
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I 0.742
29912.m005376 Ricinus communis 29912.m005376 I 0.735
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I 0.734
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I 0.734
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I 0.731
Bra018818 Brassica rapa Bra018818 I 0.728
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I 0.728
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I 0.728
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I 0.728
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I 0.728
Carubv10009836m.g Capsella rubella Carubv10009836m.g I 0.728
Bo6g018740 Brassica oleracea Bo6g018740 I 0.728
TRB1 Arabidopsis thaliana AT1G49950 D 0.728
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.728
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I 0.722
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I 0.722
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I 0.722
TCM_042744 Theobroma cacao TCM_042744 I 0.721
Thhalv10012087m.g Eutrema salsugineum Thhalv10012087m.g I 0.720
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I 0.718
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I 0.718
Aquca_001_00028 Aquilegia coerulea Aquca_001_00028 I 0.717
Solyc07g040920.2 Solanum lycopersicum Solyc07g040920.2 I 0.716
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I 0.715
LPERR01G24270 Leersia perrieri LPERR01G24270 I 0.715
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I 0.715
Si002467m.g Setaria italica Si002467m.g I 0.715
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I 0.715
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I 0.715
MTR_2g099610 Medicago truncatula MTR_2g099610 I 0.713
mgf007122m Mimulus guttatus mgf007122m I 0.711
SapurV1A.0087s0150 Salix purpurea SapurV1A.0087s0150 I 0.709
Eucgr.C00865 Eucalyptus grandis Eucgr.C00865 I 0.709
SapurV1A.0108s0150 Salix purpurea SapurV1A.0108s0150 I 0.709
PK00568.1 Cannabis sativa PK00568.1 I 0.709
POPTR_0006s14940 Populus trichocarpa POPTR_0006s14940 I 0.709
MTR_8g018410 Medicago truncatula MTR_8g018410 I 0.704
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I 0.703
Ca_02722 Cicer arietinum Ca_02722 I 0.703
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I 0.703
VIT_11s0016g01890 Vitis vinifera VIT_11s0016g01890 I 0.701
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I 0.701
MDP0000265359 Malus domestica MDP0000265359 I 0.701
PRUPE_ppa007796mg Prunus persica PRUPE_ppa007796mg I 0.701
gene12682-v1.0-hybrid Fragaria vesca gene12682-v1.0-hybrid I 0.701
Pm027209 Prunus mume Pm027209 I 0.701
GLYMA09G03390 Glycine max GLYMA09G03390 I 0.700
gene25445-v1.0-hybrid Fragaria vesca gene25445-v1.0-hybrid I 0.700
GSMUA_Achr6G31260_001 Musa acuminata GSMUA_Achr6G31260_001 I 0.700
GSMUA_Achr6G30000_001 Musa acuminata GSMUA_Achr6G30000_001 I 0.700
GLYMA15G14320 Glycine max GLYMA15G14320 I 0.700
Pavir.Eb02802 Panicum virgatum Pavir.Eb02802 I 0.697
GRMZM2G108424 Zea mays GRMZM2G108424 I 0.697
Sb03g032530 Sorghum bicolor Sb03g032530 I 0.697
Traes_5AS_8756ECB5A Triticum aestivum Traes_5AS_8756ECB5A I 0.695
Traes_5DS_3EE830A43 Triticum aestivum Traes_5DS_3EE830A43 I 0.695
TRIUR3_10613 Triticum urartu TRIUR3_10613 I 0.695
Traes_5BS_EB206B8BC Triticum aestivum Traes_5BS_EB206B8BC I 0.695
MLOC_10278 Hordeum vulgare MLOC_10278 I 0.695
BRADI4G01770 Brachypodium distachyon BRADI4G01770 I 0.695
BRADI2G42240 Brachypodium distachyon BRADI2G42240 I 0.693
Pavir.J27218 Panicum virgatum Pavir.J27218 I 0.693
Si002403m.g Setaria italica Si002403m.g I 0.693
Pavir.Ea02064 Panicum virgatum Pavir.Ea02064 I 0.693
Ca_10058 Cicer arietinum Ca_10058 I 0.693
gene07496-v1.0-hybrid Fragaria vesca gene07496-v1.0-hybrid I 0.693
Bo5g077530 Brassica oleracea Bo5g077530 I 0.689
Bra039650 Brassica rapa Bra039650 I 0.689
mgf009594m Mimulus guttatus mgf009594m I 0.689
AMTR_s00007p00193000 Amborella trichopoda AMTR_s00007p00193000 I 0.689
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.688
TRAES3BF118300070CFD_g Triticum aestivum TRAES3BF118300070CFD_g I 0.683
Sb03g026470 Sorghum bicolor Sb03g026470 I 0.683
GRMZM2G136887 Zea mays GRMZM2G136887 I 0.683
GRMZM2G087817 Zea mays GRMZM2G087817 I 0.683
Traes_3AL_CF481F6AC Triticum aestivum Traes_3AL_CF481F6AC I 0.683
mgf011386m Mimulus guttatus mgf011386m I 0.683
TRIUR3_08672 Triticum urartu TRIUR3_08672 I 0.683
OPUNC01G21220 Oryza punctata OPUNC01G21220 I 0.677
OMERI01G19510 Oryza meridionalis OMERI01G19510 I 0.677
Thhalv10011866m.g Eutrema salsugineum Thhalv10011866m.g I 0.677
ONIVA01G23780 Oryza nivara ONIVA01G23780 I 0.677
OMERI01G19490 Oryza meridionalis OMERI01G19490 I 0.677
ORUFI01G23880 Oryza rufipogon ORUFI01G23880 I 0.677
LPERR01G18090 Leersia perrieri LPERR01G18090 I 0.677
OS01G0589300 Oryza sativa OS01G0589300 I 0.677
BGIOSGA003871 Oryza indica BGIOSGA003871 I 0.677
OBART01G21150 Oryza barthii OBART01G21150 I 0.677
ORGLA01G0168300 Oryza glaberrima ORGLA01G0168300 I 0.677
OLONG_011068 Oryza longistaminata OLONG_011068 I 0.677
EuGene.1300010252 Ostreococcus RCC809 EuGene.1300010252 I 0.676
Gorai.001G013000 Gossypium raimondii Gorai.001G013000 I 0.675
TCM_037620 Theobroma cacao TCM_037620 I 0.675
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I 0.673
Pm002374 Prunus mume Pm002374 I 0.673
SapurV1A.0019s0460 Salix purpurea SapurV1A.0019s0460 I 0.673
Pm021139 Prunus mume Pm021139 I 0.673
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I 0.673
GLYMA05G22500 Glycine max GLYMA05G22500 I 0.673
29661.m000926 Ricinus communis 29661.m000926 I 0.673
LjT25P15.150.nd Lotus japonicus LjT25P15.150.nd I 0.673
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I 0.673
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I 0.673
PK06103.1 Cannabis sativa PK06103.1 D 0.673
cassava19326.valid.m1 Manihot esculenta cassava19326.valid.m1 I 0.673
GLYMA11G05070 Glycine max GLYMA11G05070 I 0.673
MTR_4g097130 Medicago truncatula MTR_4g097130 I 0.673
GLYMA01G40220 Glycine max GLYMA01G40220 I 0.673
GLYMA17G17370 Glycine max GLYMA17G17370 I 0.673
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I 0.673
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I 0.673
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I 0.673
PRUPE_ppa009220mg Prunus persica PRUPE_ppa009220mg I 0.673
Cucsa.103240 Cucumis sativus Cucsa.103240 I 0.673
TCM_000807 Theobroma cacao TCM_000807 I 0.673
Ca_02232 Cicer arietinum Ca_02232 I 0.673
Bostr.7128s0053 Boechera stricta Bostr.7128s0053 I 0.673
Cla014248 Citrullus lanatus Cla014248 I 0.673
Eucgr.I01053 Eucalyptus grandis Eucgr.I01053 I 0.673
POPTR_0009s09020 Populus trichocarpa POPTR_0009s09020 I 0.673
Lus10033775.g Linum usitatissimum Lus10033775.g I 0.673
MDP0000239354 Malus domestica MDP0000239354 I 0.673
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I 0.673
Ca_09355 Cicer arietinum Ca_09355 I 0.673
Lus10014653.g Linum usitatissimum Lus10014653.g I 0.673
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I 0.673
29812.m000204 Ricinus communis 29812.m000204 I 0.673
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I 0.673
EuGene.0000030935 Micromonas pusilla EuGene.0000030935 I 0.669
mgf010975m Mimulus guttatus mgf010975m I 0.667
mgf000125m Mimulus guttatus mgf000125m I 0.667
Ca_08043 Cicer arietinum Ca_08043 I 0.666
MTR_2g031870 Medicago truncatula MTR_2g031870 I 0.666
Eucgr.H02312 Eucalyptus grandis Eucgr.H02312 I 0.663