MYB88 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT2G02820 T266381_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB88
M07042_2.00		 Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN		 Dap-seq
OMalley et al.(2016)
MYB88_col_a		 (Direct) (Direct)
MYB88
M07043_2.00		 Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN		 Dap-seq
OMalley et al.(2016)
MYB88_colamp_a		 (Direct) (Direct)
MYB88
M11038_2.00		 Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB88_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB124
M01267_2.00 		Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN		 PBM
Lambert et al.(2019)
pTH11556 		0.824 0.912
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G02820.1 Myb 31 76
AT2G02820.1 Myb 82 126
AT2G02820.2 Myb 31 76
AT2G02820.2 Myb 82 126
AT2G02820.3 Myb 31 76
AT2G02820.3 Myb 82 126

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I 0.909
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I 0.872
Bo2g136560 Brassica oleracea Bo2g136560 I 0.864
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I 0.859
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I 0.841
Bra019658 Brassica rapa Bra019658 I 0.841
Bo5g019500 Brassica oleracea Bo5g019500 I 0.841
Carubv10017119m.g Capsella rubella Carubv10017119m.g I 0.838
Cagra.0534s0022 Capsella grandiflora Cagra.0534s0022 I 0.838
Bra024804 Brassica rapa Bra024804 I 0.825
MYB124 Arabidopsis thaliana AT1G14350 D 0.824
29736.m002013 Ricinus communis 29736.m002013 I 0.821
Bo7g080730 Brassica oleracea Bo7g080730 I 0.815
Lus10030494.g Linum usitatissimum Lus10030494.g I 0.814
Lus10012847.g Linum usitatissimum Lus10012847.g I 0.814
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I 0.810
cassava39089.m1 Manihot esculenta cassava39089.m1 I 0.810
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I 0.810
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I 0.810
MDP0000165523 Malus domestica MDP0000165523 I 0.810
TCM_011776 Theobroma cacao TCM_011776 I 0.810
Carubv10011707m.g Capsella rubella Carubv10011707m.g I 0.809
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I 0.809
Bostr.13671s0016 Boechera stricta Bostr.13671s0016 I 0.809
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I 0.806
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I 0.802
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I 0.802
Eucgr.B03417 Eucalyptus grandis Eucgr.B03417 I 0.785
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I 0.785
MTR_5g038910 Medicago truncatula MTR_5g038910 I 0.780
Ca_18779 Cicer arietinum Ca_18779 I 0.780
PK05123.1 Cannabis sativa PK05123.1 I 0.780
GLYMA01G05190 Glycine max GLYMA01G05190 I 0.780
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I 0.780
GLYMA02G02310 Glycine max GLYMA02G02310 I 0.780
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I 0.780
Cla010333 Citrullus lanatus Cla010333 I 0.776
Cucsa.285270 Cucumis sativus Cucsa.285270 I 0.776
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I 0.773
Ciclev10031405m.g Citrus clementina Ciclev10031405m.g I 0.773
Pm006532 Prunus mume Pm006532 I 0.772
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I 0.772
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I 0.770
MTR_8g468380 Medicago truncatula MTR_8g468380 I 0.770
mgf009409m Mimulus guttatus mgf009409m I 0.764
MDP0000210970 Malus domestica MDP0000210970 I 0.764
GLYMA08G40950 Glycine max GLYMA08G40950 I 0.763
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I 0.750
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I 0.750
GLYMA18G16040 Glycine max GLYMA18G16040 I 0.742
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I 0.738
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I 0.725
Si029124m.g Setaria italica Si029124m.g I 0.710
Pavir.J36475 Panicum virgatum Pavir.J36475 I 0.701
Traes_2AS_1161E1D2E Triticum aestivum Traes_2AS_1161E1D2E I 0.699
GSMUA_Achr10G18880_001 Musa acuminata GSMUA_Achr10G18880_001 I 0.696
GSMUA_Achr6G10650_001 Musa acuminata GSMUA_Achr6G10650_001 I 0.696
AMTR_s00010p00252990 Amborella trichopoda AMTR_s00010p00252990 I 0.689
PDK_20s1473891g001 Phoenix dactylifera PDK_20s1473891g001 I 0.689
BGIOSGA026188 Oryza indica BGIOSGA026188 I 0.682
OS07G0627300 Oryza sativa OS07G0627300 I 0.682
ORUFI07G24080 Oryza rufipogon ORUFI07G24080 I 0.682
ORGLA07G0179200 Oryza glaberrima ORGLA07G0179200 I 0.682
Traes_2DS_9430AAD52 Triticum aestivum Traes_2DS_9430AAD52 I 0.682
OBART07G22930 Oryza barthii OBART07G22930 I 0.682
Traes_2BS_F1B450FA4 Triticum aestivum Traes_2BS_F1B450FA4 I 0.682
OGLUM07G22980 Oryza glumaepatula OGLUM07G22980 I 0.682
Pavir.Bb03405 Panicum virgatum Pavir.Bb03405 I 0.680
OB07G28520 Oryza brachyantha OB07G28520 I 0.677
OPUNC07G21540 Oryza punctata OPUNC07G21540 I 0.673
GRMZM2G064630 Zea mays GRMZM2G064630 I 0.673
Sb02g040050 Sorghum bicolor Sb02g040050 I 0.673
PGSC0003DMG400026758 Solanum tuberosum PGSC0003DMG400026758 I 0.672
Solyc04g005710.1 Solanum lycopersicum Solyc04g005710.1 I 0.672
PGSC0003DMG400002828 Solanum tuberosum PGSC0003DMG400002828 I 0.672