MYB1 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT3G09230 T266426_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
member of MYB3R- and R2R3- type MYB- encoding genes

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH

DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN

NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.784 0.806
OS02G0187700
M02327_2.00
Oryza sativa
NTAMCKGTHN

NDACMGKTAN
PBM
Weirauch et al.(2014)
pTH8645
0.734 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G09230.1 Myb 55 101
AT3G09230.1 Myb 107 152

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I 0.849
Cagra.2515s0014 Capsella grandiflora Cagra.2515s0014 I 0.840
Carubv10013882m.g Capsella rubella Carubv10013882m.g I 0.840
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I 0.819
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I 0.801
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I 0.797
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I 0.797
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I 0.796
Bo3g062160 Brassica oleracea Bo3g062160 I 0.793
PK07741.1 Cannabis sativa PK07741.1 D 0.784
MLOC_10322 Hordeum vulgare MLOC_10322 I 0.776
MDP0000284922 Malus domestica MDP0000284922 I 0.774
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I 0.774
TCM_042629 Theobroma cacao TCM_042629 I 0.774
Pm018862 Prunus mume Pm018862 I 0.773
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I 0.769
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.767
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I 0.764
MDP0000807341 Malus domestica MDP0000807341 I 0.758
GLYMA14G06870 Glycine max GLYMA14G06870 I 0.755
Si001686m.g Setaria italica Si001686m.g I 0.754
Bra001323 Brassica rapa Bra001323 I 0.748
Lus10028250.g Linum usitatissimum Lus10028250.g I 0.744
Lus10040239.g Linum usitatissimum Lus10040239.g I 0.744
MDP0000478512 Malus domestica MDP0000478512 I 0.744
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I 0.743
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I 0.743
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I 0.743
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I 0.742
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I 0.742
Cagra.0003s0013 Capsella grandiflora Cagra.0003s0013 I 0.742
Carubv10017397m.g Capsella rubella Carubv10017397m.g I 0.742
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.740
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.737
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I 0.737
GSMUA_Achr9G03720_001 Musa acuminata GSMUA_Achr9G03720_001 I 0.735
OS02G0187700 Oryza sativa OS02G0187700 D 0.734
MLOC_7426 Hordeum vulgare MLOC_7426 I 0.734
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I 0.734
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I 0.734
ONIVA02G08210 Oryza nivara ONIVA02G08210 I 0.734
OMERI02G07700 Oryza meridionalis OMERI02G07700 I 0.734
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I 0.734
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I 0.734
OPUNC02G05820 Oryza punctata OPUNC02G05820 I 0.734
Sb04g005940 Sorghum bicolor Sb04g005940 I 0.734
LPERR02G05810 Leersia perrieri LPERR02G05810 I 0.734
Si017917m.g Setaria italica Si017917m.g I 0.734
Pavir.J23512 Panicum virgatum Pavir.J23512 I 0.734
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.734
GRMZM2G145444 Zea mays GRMZM2G145444 I 0.734
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.733
GLYMA03G15810 Glycine max GLYMA03G15810 I 0.732
mgf018580m Mimulus guttatus mgf018580m I 0.730
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I 0.730
GLYMA02G42030 Glycine max GLYMA02G42030 I 0.729
Bra007186 Brassica rapa Bra007186 I 0.727
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I 0.726
GLYMA01G26650 Glycine max GLYMA01G26650 I 0.723
MTR_4g019370 Medicago truncatula MTR_4g019370 I 0.723
Sb03g039950 Sorghum bicolor Sb03g039950 I 0.721
Bo7g117880 Brassica oleracea Bo7g117880 I 0.721
Pavir.J13677 Panicum virgatum Pavir.J13677 I 0.721
Bra034057 Brassica rapa Bra034057 I 0.721
GRMZM2G169316 Zea mays GRMZM2G169316 I 0.721
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I 0.721
Ciclev10012003m.g Citrus clementina Ciclev10012003m.g I 0.719
orange1.1g017566m.g Citrus sinensis orange1.1g017566m.g I 0.719
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.718
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.718
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I 0.718
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I 0.718
Bo8g090160 Brassica oleracea Bo8g090160 I 0.718
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.718
Solyc05g052850.2 Solanum lycopersicum Solyc05g052850.2 I 0.717
MDP0000203733 Malus domestica MDP0000203733 I 0.717
MDP0000319124 Malus domestica MDP0000319124 I 0.717
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.715
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.713
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.713
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.713
Si032789m.g Setaria italica Si032789m.g I 0.713
MYB109 Arabidopsis lyrata fgenesh2_kg.5__1999__AT3G55730.1 I 0.712
TRIUR3_08319 Triticum urartu TRIUR3_08319 I 0.712
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I 0.712
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I 0.712
Gorai.010G016800 Gossypium raimondii Gorai.010G016800 I 0.711
gene26289-v1.0-hybrid Fragaria vesca gene26289-v1.0-hybrid I 0.711
Sb10g024950 Sorghum bicolor Sb10g024950 I 0.710
Pavir.Db00693 Panicum virgatum Pavir.Db00693 I 0.710
Pavir.Da00404 Panicum virgatum Pavir.Da00404 I 0.710
Si006938m.g Setaria italica Si006938m.g I 0.710
GRMZM5G803308 Zea mays GRMZM5G803308 I 0.710
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I 0.710
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.709
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.709
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.709
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.709
OBART09G00310 Oryza barthii OBART09G00310 I 0.709
OB09G10200 Oryza brachyantha OB09G10200 I 0.709
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.709
Bo1g144680 Brassica oleracea Bo1g144680 I 0.709
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.709
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.709
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.709
OS09G0106700 Oryza sativa OS09G0106700 I 0.709
mgf025567m Mimulus guttatus mgf025567m I 0.708
Solyc04g079360.1 Solanum lycopersicum Solyc04g079360.1 I 0.707
mgf006151m Mimulus guttatus mgf006151m I 0.707
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I 0.707
PGSC0003DMG400007994 Solanum tuberosum PGSC0003DMG400007994 I 0.707
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.707
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I 0.706
Pm002576 Prunus mume Pm002576 I 0.705
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I 0.705
TCM_021796 Theobroma cacao TCM_021796 I 0.705
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I 0.703
VIT_08s0007g01540 Vitis vinifera VIT_08s0007g01540 I 0.703
PK12959.1 Cannabis sativa PK12959.1 I 0.703
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I 0.702
29801.m003096 Ricinus communis 29801.m003096 I 0.702
GLYMA14G06320 Glycine max GLYMA14G06320 I 0.702
F775_09670 Aegilops tauschii F775_09670 I 0.701
SapurV1A.0262s0270 Salix purpurea SapurV1A.0262s0270 I 0.701
MTR_6g015455 Medicago truncatula MTR_6g015455 I 0.700
mgf023922m Mimulus guttatus mgf023922m I 0.698
Aquca_007_00580 Aquilegia coerulea Aquca_007_00580 I 0.698
gene18756-v1.0-hybrid Fragaria vesca gene18756-v1.0-hybrid I 0.698
mgf015566m Mimulus guttatus mgf015566m I 0.697
GRMZM2G078820 Zea mays GRMZM2G078820 I 0.696
Gorai.006G179700 Gossypium raimondii Gorai.006G179700 I 0.696
OMERI01G34370 Oryza meridionalis OMERI01G34370 I 0.696
VIT_18s0001g11170 Vitis vinifera VIT_18s0001g11170 I 0.695
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I 0.693
ORGLA01G0312200 Oryza glaberrima ORGLA01G0312200 I 0.693
ONIVA01G42300 Oryza nivara ONIVA01G42300 I 0.693
OLONG_001357 Oryza longistaminata OLONG_001357 I 0.693
BGIOSGA000485 Oryza indica BGIOSGA000485 I 0.693
Cla018417 Citrullus lanatus Cla018417 I 0.693
OS01G0850400 Oryza sativa OS01G0850400 I 0.693
27798.m000612 Ricinus communis 27798.m000612 I 0.693
OGLUM01G41330 Oryza glumaepatula OGLUM01G41330 I 0.693
ORUFI01G40770 Oryza rufipogon ORUFI01G40770 I 0.693
OBART01G37390 Oryza barthii OBART01G37390 I 0.693
PGSC0003DMG400027190 Solanum tuberosum PGSC0003DMG400027190 I 0.693
Cucsa.066910 Cucumis sativus Cucsa.066910 I 0.693
OPUNC01G36300 Oryza punctata OPUNC01G36300 I 0.693
Eucgr.F02372 Eucalyptus grandis Eucgr.F02372 I 0.691
gene09039-v1.0-hybrid Fragaria vesca gene09039-v1.0-hybrid I 0.691
PK16550.1 Cannabis sativa PK16550.1 I 0.691
TCM_033907 Theobroma cacao TCM_033907 I 0.690
Cla021015 Citrullus lanatus Cla021015 I 0.689
MTR_5g082910 Medicago truncatula MTR_5g082910 I 0.689
Cucsa.244650 Cucumis sativus Cucsa.244650 I 0.689
Cucsa.232630 Cucumis sativus Cucsa.232630 I 0.686
PK29071.1 Cannabis sativa PK29071.1 I 0.686
Cla022889 Citrullus lanatus Cla022889 I 0.686
Lus10014103.g Linum usitatissimum Lus10014103.g I 0.683
MDP0000187872 Malus domestica MDP0000187872 I 0.683
GLYMA02G43280 Glycine max GLYMA02G43280 I 0.683
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.682
Eucgr.F00031 Eucalyptus grandis Eucgr.F00031 I 0.682
mgf003084m Mimulus guttatus mgf003084m I 0.682
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.681
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I 0.681
MYB109 Arabidopsis thaliana AT3G55730 I 0.677
Bra005006 Brassica rapa Bra005006 I 0.677
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I 0.677
MLOC_63964 Hordeum vulgare MLOC_63964 I 0.676
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I 0.676
Lus10021762.g Linum usitatissimum Lus10021762.g I 0.676
TRIUR3_25447 Triticum urartu TRIUR3_25447 I 0.676
Cla013306 Citrullus lanatus Cla013306 I 0.674
Pm021211 Prunus mume Pm021211 I 0.674
PRUPE_ppa023154mg Prunus persica PRUPE_ppa023154mg I 0.674
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I 0.673
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I 0.673
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I 0.673
GLYMA05G21220 Glycine max GLYMA05G21220 I 0.672
Bo4g025810 Brassica oleracea Bo4g025810 I 0.672
MDP0000784297 Malus domestica MDP0000784297 I 0.671
GSMUA_Achr4G12950_001 Musa acuminata GSMUA_Achr4G12950_001 I 0.671
MDP0000823270 Malus domestica MDP0000823270 I 0.671
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.671
MDP0000477900 Malus domestica MDP0000477900 I 0.671
MDP0000480596 Malus domestica MDP0000480596 I 0.671
MDP0000641708 Malus domestica MDP0000641708 I 0.671
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.668
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I 0.668
CM0528.210.nd Lotus japonicus CM0528.210.nd I 0.668
PRUPE_ppa010735mg Prunus persica PRUPE_ppa010735mg I 0.666
Lus10032764.g Linum usitatissimum Lus10032764.g I 0.666
MDP0000894463 Malus domestica MDP0000894463 I 0.666
Pm005220 Prunus mume Pm005220 I 0.666
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I 0.666
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I 0.666
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I 0.666
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.665
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I 0.665
GSMUA_Achr9G22600_001 Musa acuminata GSMUA_Achr9G22600_001 I 0.665
OB01G46120 Oryza brachyantha OB01G46120 I 0.663
MTR_4g094982 Medicago truncatula MTR_4g094982 I 0.663
LPERR01G32110 Leersia perrieri LPERR01G32110 I 0.663
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.663
Cla022947 Citrullus lanatus Cla022947 I 0.662
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.662
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I 0.662
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I 0.662
GLYMA04G04490 Glycine max GLYMA04G04490 I 0.661
Cucsa.123440 Cucumis sativus Cucsa.123440 I 0.661