ARR1 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT3G16857 T266446_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Also involved in cytokinin-dependent inhibition of hypocotyl elongation and cytokinin-dependent greening and shooting in tissue culture.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARR1
M02296_2.00		 Arabidopsis thaliana
NDGATHYBNN
NNVRDATCHN		 PBM
Weirauch et al.(2014)
pTH8257		 (Direct) (Direct)
ARR1
M02297_2.00		 Arabidopsis thaliana
NAAGATHCKN
NMGDATCTTN		 PBM
Weirauch et al.(2014)
pTH8590		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
e_gw1.362.4.1
M02341_2.00 		Physcomitrella patens
NNNRDATCNN
NNGATHYNNN		 PBM
Weirauch et al.(2014)
pTH8461 		0.765 0.894
estExt_fgenesh1_pg.C_Chr_16.00010090
M02367_2.00 		Ostreococcus tauri
NNNDATCN
NGATHNNN		 PBM
Weirauch et al.(2014)
pTH9644 		0.705 0.830
ARR14
M00873_2.00 		Arabidopsis thaliana
NNAGATHCKS
SMGDATCTNN		 PBM
Franco-Zorrilla et al.(2014)
ARR14 		0.701 0.830
ARR14
M02293_2.00 		Arabidopsis thaliana
NAGATHYBNN
NNVRDATCTN		 PBM
Weirauch et al.(2014)
pTH7531 		0.701 0.830
ARR10
M02702_2.00 		Arabidopsis thaliana
AGATHYKN
NMRDATCT		 SELEX
Mathelier et al.(2014)
MA0121.1 		0.684 0.766
ARR10
M11045_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ARR10_01 		0.684 0.766
ARR18
M02313_2.00 		Arabidopsis thaliana
NNNNAGATAYGNN
NNCRTATCTNNNN		 PBM
Weirauch et al.(2014)
pTH8840 		0.674 0.830
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02296_2.00 Myb 51 101
M02297_2.00 Myb 51 101

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G16857.1 Myb 239 289
AT3G16857.2 Myb 239 289
AT3G16857.3 Myb 169 219

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

Invalid Input OrderBy

305 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action