AT3G24120 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT3G24120 T266449_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER. Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. It seems to be involved in the calcium-mediated response to extracellular ATP.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G24120
M00729_2.00
Arabidopsis thaliana
NNKATDCBNN

NNVGHATMNN
PBM
Chang et al.(2013)
pTH7086
(Direct) (Direct)
AT3G24120
M07085_2.00
Arabidopsis thaliana
HAKATTCB

VGAATMTD
Dap-seq
OMalley et al.(2016)
At3g24120_col_a
(Direct) (Direct)
AT3G24120
M07086_2.00
Arabidopsis thaliana
NDRAAKATTCBHHN

NDDVGAATMTTYHN
Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
UNE16
M01270_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Lambert et al.(2019)
pTH9967
0.875 0.979
PHL12
M01077_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Sullivan et al.(2014)
pTH7098
0.831 0.957
PHL12
M07079_2.00
Arabidopsis thaliana
RGAATATTCYYTWN

NWARRGAATATTCY
Dap-seq
OMalley et al.(2016)
At3g12730_col_a
0.831 0.957
PHL12
M07080_2.00
Arabidopsis thaliana
NNRAAKATTCBHHN

NDDVGAATMTTYNN
Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a
0.831 0.957
MYR1
M02309_2.00
Arabidopsis thaliana
NKATNCBNNN

NNNVGNATMN
PBM
Weirauch et al.(2014)
pTH8859
0.795 0.809
MYR2
M02294_2.00
Arabidopsis thaliana
NKATDCBNN

NNVGHATMN
PBM
Weirauch et al.(2014)
pTH7097
0.789 0.787
MYR2
M07063_2.00
Arabidopsis thaliana
NNDAAKATTCYHHN

NDDRGAATMTTHNN
Dap-seq
OMalley et al.(2016)
At3g04030_col_a
0.789 0.787
MYR2
M07064_2.00
Arabidopsis thaliana
VRAAKATTCBHWNNN

NNNWDVGAATMTTYB
Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a
0.789 0.787
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN

NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.772 0.809
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS

SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.772 0.809
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN

NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.772 0.809
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH

DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.772 0.809
PHL11
M07134_2.00
Arabidopsis thaliana
NNRAAKATTCYHHN

NDDRGAATMTTYNN
Dap-seq
OMalley et al.(2016)
AT5G45580_col_a
0.738 0.745
PHL11
M07135_2.00
Arabidopsis thaliana
NRAAKATTCYHHNN

NNDDRGAATMTTYN
Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a
0.738 0.745
Q5IWM2_WHEAT
M11059_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB80_01
0.700 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00729_2.00 Myb 43 94

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G24120.1 Myb 43 94
AT3G24120.2 Myb 43 94

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

794 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACRE_034890 Acremonium chrysogenum ACRE_034890 I 0.000
AOL_s00083g463 Arthrobotrys oligospora AOL_s00083g463 I 0.000
ARB_05394 Arthroderma benhamiae ARB_05394 N 0.000
MCYG_00678 Arthroderma otae MCYG_00678 N 0.000
BBA_01304 Beauveria bassiana BBA_01304 I 0.000
Bcin02g07540 Botrytis cinerea Bcin02g07540 I 0.000
CTHT_0018750 Chaetomium thermophilum CTHT_0018750 I 0.000
Z519_10261 Cladophialophora bantiana Z519_10261 I 0.000
A1O5_03439 Cladophialophora psammophila A1O5_03439 I 0.000
CPUR_04347 Claviceps purpurea CPUR_04347 I 0.000
CIMG_03820 Coccidioides immitis CIMG_03820 N 0.000
CPC735_005020 Coccidioides posadasii CPC735_005020 N 0.000
CFIO01_07503 Colletotrichum fioriniae CFIO01_07503 I 0.000
CGGC5_13371 Colletotrichum gloeosporioides CGGC5_13371 I 0.000
GLRG_01973 Colletotrichum graminicola GLRG_01973 I 0.000
CH063_01293 Colletotrichum higginsianum CH063_01293 I 0.000
Cob_06009 Colletotrichum orbiculare Cob_06009 I 0.000
CSUB01_04252 Colletotrichum sublineola CSUB01_04252 I 0.000
CCM_01294 Cordyceps militaris CCM_01294 I 0.000
H072_10673 Dactylellina haptotyla H072_10673 I 0.000
EV44_g6127 Erysiphe necator EV44_g6127 I 0.000
UCREL1_8337 Eutypa lata UCREL1_8337 I 0.000
FFUJ_13548 Fusarium fujikuroi FFUJ_13548 I 0.000
FGRRES_06311 Fusarium graminearum FGRRES_06311 I 0.000
FOXG_08063 Fusarium oxysporum FOXG_08063 I 0.000
FPSE_01182 Fusarium pseudograminearum FPSE_01182 I 0.000
NechaG38204 Fusarium solani NechaG38204 I 0.000
FVEG_04985 Fusarium verticillioides FVEG_04985 I 0.000
GGTG_05592 Gaeumannomyces graminis GGTG_05592 I 0.000
CMQ_5441 Grosmannia clavigera CMQ_5441 I 0.000
MAPG_04524 Magnaporthe poae MAPG_04524 I 0.000
MBM_04034 Marssonina brunnea MBM_04034 I 0.000
MAC_04654 Metarhizium acridum MAC_04654 I 0.000
MAM_00034 Metarhizium album MAM_00034 I 0.000
MANI_117684 Metarhizium anisopliae MANI_117684 I 0.000
MBR_02972 Metarhizium brunneum MBR_02972 I 0.000
MGU_00040 Metarhizium guizhouense MGU_00040 I 0.000
MAJ_07370 Metarhizium majus MAJ_07370 I 0.000
X797_001037 Metarhizium robertsii X797_001037 I 0.000
MCYG_00678 Microsporum canis MCYG_00678 N 0.000
MGYG_01294 Microsporum gypseum MGYG_01294 N 0.000
MYCTH_2308260 Myceliophthora thermophila MYCTH_2308260 I 0.000
e_gw1.3.1240.1 Nectria haematococca e_gw1.3.1240.1 I 0.000
NCU06907 Neurospora crassa NCU06907 D 0.000
estExt_fgenesh2_pg.C_80281 Neurospora discreta estExt_fgenesh2_pg.C_80281 I 0.000
NEUTE1DRAFT_130988 Neurospora tetrasperma NEUTE1DRAFT_130988 I 0.000
OIDMADRAFT_103771 Oidiodendron maius OIDMADRAFT_103771 I 0.000
OCS_03275 Ophiocordyceps sinensis OCS_03275 I 0.000
F503_03781 Ophiostoma piceae uamh F503_03781 I 0.000
PFICI_12570 Pestalotiopsis fici PFICI_12570 I 0.000
PODANS_5_11890 Podospora anserina PODANS_5_11890 I 0.000
GMDG_06980 Pseudogymnoascus destructans GMDG_06980 I 0.000
V499_09093 Pseudogymnoascus pannorum V499_09093 I 0.000
SAPIO_CDS4389 Scedosporium apiospermum SAPIO_CDS4389 I 0.000
SBOR_8019 Sclerotinia borealis SBOR_8019 I 0.000
SMAC_05878 Sordaria macrospora SMAC_05878 I 0.000
SPBR_02307 Sporothrix brasiliensis SPBR_02307 I 0.000
HMPREF1624_02827 Sporothrix schenckii HMPREF1624_02827 I 0.000
S40288_02152 Stachybotrys chartarum S40288_02152 I 0.000
S40285_02311 Stachybotrys chlorohalonata S40285_02311 I 0.000
THITE_2117700 Thielavia terrestris THITE_2117700 I 0.000
UCRPA7_7147 Togninia minima UCRPA7_7147 I 0.000
VHEMI07645 Torrubiella hemipterigena VHEMI07645 I 0.000
TRIREDRAFT_121584 Trichoderma reesei TRIREDRAFT_121584 I 0.000
TRIVIDRAFT_82456 Trichoderma virens TRIVIDRAFT_82456 I 0.000
TEQG_05544 Trichophyton equinum TEQG_05544 N 0.000
H101_04757 Trichophyton interdigitale H101_04757 N 0.000
H102_07608 Trichophyton rubrum H102_07608 N 0.000
H105_07634 Trichophyton soudanense H105_07634 N 0.000
TESG_05703 Trichophyton tonsurans TESG_05703 N 0.000
TRV_03376 Trichophyton verrucosum TRV_03376 N 0.000
GSTUM_00007462001 Tuber melanosporum GSTUM_00007462001 I 0.000
UV8b_4535 Ustilaginoidea virens UV8b_4535 I 0.000
VDBG_03095 Verticillium albo atrum VDBG_03095 I 0.000
VDBG_03095 Verticillium alfalfae VDBG_03095 I 0.000
VDAG_04003 Verticillium dahliae VDAG_04003 I 0.000