PCL1 (Arabidopsis thaliana)

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT3G46640 T266463_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock. LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness. It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Arabidopsis thaliana

Weirauch et al.(2014)
0.827 0.957
Arabidopsis thaliana

Franco-Zorrilla et al.(2014)
0.662 0.660
Arabidopsis thaliana

Weirauch et al.(2014)
0.662 0.660
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G46640.1 Myb 146 196
AT3G46640.2 Myb 146 196
AT3G46640.3 Myb 146 196


Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

305 Related TFs

Name Species Gene ID Motif Evidence SR
29900.m001555 Ricinus communis 29900.m001555 I 0.000
30072.m000927 Ricinus communis 30072.m000927 I 0.000
WOX9 Arabidopsis lyrata Al_scaffold_0004_1872 I 0.000
WOX12 Arabidopsis lyrata Al_scaffold_0006_1694 I 0.000
AMTR_s00021p00189010 Amborella trichopoda AMTR_s00021p00189010 I 0.000
AMTR_s00119p00100440 Amborella trichopoda AMTR_s00119p00100440 I 0.000
Aquca_014_00949 Aquilegia coerulea Aquca_014_00949 I 0.000
Aquca_036_00007 Aquilegia coerulea Aquca_036_00007 I 0.000
WOX9 Arabidopsis thaliana AT2G33880 I 0.000
WOX11 Arabidopsis thaliana AT3G03660 D 0.000
WOX12 Arabidopsis thaliana AT5G17810 I 0.000
WOX8 Arabidopsis thaliana AT5G45980 I 0.000
BGIOSGA001059 Oryza indica BGIOSGA001059 I 0.000
WOX6 Oryza indica BGIOSGA010824 I 0.000
BGIOSGA020366 Oryza indica BGIOSGA020366 I 0.000
BGIOSGA026413 Oryza indica BGIOSGA026413 I 0.000
WOX10 Oryza indica BGIOSGA027391 I 0.000
Bo11772s010 Brassica oleracea Bo11772s010 I 0.000
Bo1g153650 Brassica oleracea Bo1g153650 I 0.000
Bo2g013980 Brassica oleracea Bo2g013980 I 0.000
Bo2g062660 Brassica oleracea Bo2g062660 I 0.000
Bo2g127670 Brassica oleracea Bo2g127670 I 0.000
Bo3g027500 Brassica oleracea Bo3g027500 I 0.000
Bo4g041330 Brassica oleracea Bo4g041330 I 0.000
Bo5g148780 Brassica oleracea Bo5g148780 I 0.000
Bo8g106350 Brassica oleracea Bo8g106350 I 0.000
Bo9g070070 Brassica oleracea Bo9g070070 I 0.000
Bo9g159820 Brassica oleracea Bo9g159820 I 0.000
Bostr.19046s0084 Boechera stricta Bostr.19046s0084 I 0.000
Bostr.23794s0703 Boechera stricta Bostr.23794s0703 I 0.000
Bostr.8819s0128 Boechera stricta Bostr.8819s0128 I 0.000
Bra002108 Brassica rapa Bra002108 I 0.000
Bra005464 Brassica rapa Bra005464 I 0.000
Bra017448 Brassica rapa Bra017448 I 0.000
Bra022008 Brassica rapa Bra022008 I 0.000
Bra022960 Brassica rapa Bra022960 I 0.000
Bra023638 Brassica rapa Bra023638 I 0.000
Bra026791 Brassica rapa Bra026791 I 0.000
Bra031980 Brassica rapa Bra031980 I 0.000
Bra036446 Brassica rapa Bra036446 I 0.000
BRADI1G17420 Brachypodium distachyon BRADI1G17420 I 0.000
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I 0.000
Cagra.1195s0012 Capsella grandiflora Cagra.1195s0012 I 0.000
Cagra.2097s0014 Capsella grandiflora Cagra.2097s0014 I 0.000
Cagra.2098s0022 Capsella grandiflora Cagra.2098s0022 I 0.000
Cagra.6254s0027 Capsella grandiflora Cagra.6254s0027 I 0.000
Carubv10003719m.g Capsella rubella Carubv10003719m.g I 0.000
Carubv10016081m.g Capsella rubella Carubv10016081m.g I 0.000
Carubv10025224m.g Capsella rubella Carubv10025224m.g I 0.000
Carubv10027735m.g Capsella rubella Carubv10027735m.g I 0.000
cassava15562.m1 Manihot esculenta cassava15562.m1 I 0.000
cassava40675.m1 Manihot esculenta cassava40675.m1 I 0.000
cassava4506.m1 Manihot esculenta cassava4506.m1 I 0.000
cassava4770.m1 Manihot esculenta cassava4770.m1 I 0.000
Ca_00357 Cicer arietinum Ca_00357 I 0.000
Ca_06365 Cicer arietinum Ca_06365 I 0.000
Ca_08180 Cicer arietinum Ca_08180 I 0.000
Ca_19701 Cicer arietinum Ca_19701 I 0.000
Ciclev10015562m.g Citrus clementina Ciclev10015562m.g I 0.000
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I 0.000
Cla009819 Citrullus lanatus Cla009819 I 0.000
CM1489.70.nc Lotus japonicus CM1489.70.nc I 0.000
Cucsa.046640 Cucumis sativus Cucsa.046640 I 0.000
Cucsa.336980 Cucumis sativus Cucsa.336980 I 0.000
Eucgr.A02149 Eucalyptus grandis Eucgr.A02149 I 0.000
Eucgr.D00577 Eucalyptus grandis Eucgr.D00577 I 0.000
evm.TU.supercontig_7.12 Carica papaya evm.TU.supercontig_7.12 I 0.000
evm.TU.supercontig_73.3 Carica papaya evm.TU.supercontig_73.3 I 0.000
F775_11947 Aegilops tauschii F775_11947 I 0.000
F775_22811 Aegilops tauschii F775_22811 I 0.000
F775_23099 Aegilops tauschii F775_23099 I 0.000
WOX11 Arabidopsis lyrata fgenesh2_kg.3__312__AT3G03660.1 I 0.000
gene28935-v1.0-hybrid Fragaria vesca gene28935-v1.0-hybrid I 0.000
gene29786-v1.0-hybrid Fragaria vesca gene29786-v1.0-hybrid I 0.000
gene30337-v1.0-hybrid Fragaria vesca gene30337-v1.0-hybrid I 0.000
GLYMA03G01000 Glycine max GLYMA03G01000 I 0.000
GLYMA07G32430 Glycine max GLYMA07G32430 I 0.000
GLYMA10G08030 Glycine max GLYMA10G08030 I 0.000
GLYMA13G21860 Glycine max GLYMA13G21860 I 0.000
GLYMA13G24150 Glycine max GLYMA13G24150 I 0.000
GLYMA19G29660 Glycine max GLYMA19G29660 I 0.000
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I 0.000
Gorai.009G165700 Gossypium raimondii Gorai.009G165700 I 0.000
Gorai.011G031300 Gossypium raimondii Gorai.011G031300 I 0.000
Gorai.013G196400 Gossypium raimondii Gorai.013G196400 I 0.000
GRMZM2G031882 Zea mays GRMZM2G031882 I 0.000
GRMZM2G133972 Zea mays GRMZM2G133972 I 0.000
GRMZM2G162481 Zea mays GRMZM2G162481 I 0.000
GRMZM2G170958 Zea mays GRMZM2G170958 I 0.000
GRMZM2G314064 Zea mays GRMZM2G314064 I 0.000
GRMZM2G409881 Zea mays GRMZM2G409881 I 0.000
GSMUA_Achr10G05090_001 Musa acuminata GSMUA_Achr10G05090_001 I 0.000
GSMUA_Achr10G12820_001 Musa acuminata GSMUA_Achr10G12820_001 I 0.000
GSMUA_Achr3G09460_001 Musa acuminata GSMUA_Achr3G09460_001 I 0.000
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I 0.000
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I 0.000
GSMUA_Achr8G01590_001 Musa acuminata GSMUA_Achr8G01590_001 I 0.000
GSMUA_Achr8G27170_001 Musa acuminata GSMUA_Achr8G27170_001 I 0.000
GSMUA_Achr9G05010_001 Musa acuminata GSMUA_Achr9G05010_001 I 0.000
GSMUA_Achr9G06660_001 Musa acuminata GSMUA_Achr9G06660_001 I 0.000
LjSGA_037808.1 Lotus japonicus LjSGA_037808.1 I 0.000
LjT26C04.20.nd Lotus japonicus LjT26C04.20.nd I 0.000
LPERR01G22080 Leersia perrieri LPERR01G22080 I 0.000
LPERR03G13850 Leersia perrieri LPERR03G13850 I 0.000
LPERR07G23470 Leersia perrieri LPERR07G23470 I 0.000
LPERR07G23520 Leersia perrieri LPERR07G23520 I 0.000
Lus10005282.g Linum usitatissimum Lus10005282.g I 0.000
MDP0000136426 Malus domestica MDP0000136426 I 0.000
MDP0000232004 Malus domestica MDP0000232004 I 0.000
MDP0000524885 Malus domestica MDP0000524885 I 0.000
MDP0000729328 Malus domestica MDP0000729328 I 0.000
mgf001579m Mimulus guttatus mgf001579m I 0.000
mgf016673m Mimulus guttatus mgf016673m I 0.000
mgf017527m Mimulus guttatus mgf017527m I 0.000
MLOC_65745 Hordeum vulgare MLOC_65745 I 0.000
MLOC_6669 Hordeum vulgare MLOC_6669 I 0.000
MLOC_7925 Hordeum vulgare MLOC_7925 I 0.000
MTR_2g015000 Medicago truncatula MTR_2g015000 I 0.000
MTR_4g088070 Medicago truncatula MTR_4g088070 I 0.000
MTR_4g088080 Medicago truncatula MTR_4g088080 I 0.000
MTR_6g027390 Medicago truncatula MTR_6g027390 I 0.000
MTR_7g025010 Medicago truncatula MTR_7g025010 I 0.000
OB01G35000 Oryza brachyantha OB01G35000 I 0.000
OB08G17020 Oryza brachyantha OB08G17020 I 0.000
OB10G14840 Oryza brachyantha OB10G14840 I 0.000
OBART01G25820 Oryza barthii OBART01G25820 I 0.000
OBART03G15820 Oryza barthii OBART03G15820 I 0.000
OBART05G25900 Oryza barthii OBART05G25900 I 0.000
OBART07G26670 Oryza barthii OBART07G26670 I 0.000
OGLUM01G29670 Oryza glumaepatula OGLUM01G29670 I 0.000
OGLUM03G15990 Oryza glumaepatula OGLUM03G15990 I 0.000
OGLUM05G27500 Oryza glumaepatula OGLUM05G27500 I 0.000
OGLUM07G26700 Oryza glumaepatula OGLUM07G26700 I 0.000
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I 0.000
OMERI01G23480 Oryza meridionalis OMERI01G23480 I 0.000
OMERI07G23310 Oryza meridionalis OMERI07G23310 I 0.000
ONIVA01G29060 Oryza nivara ONIVA01G29060 I 0.000
ONIVA05G27800 Oryza nivara ONIVA05G27800 I 0.000
ONIVA07G26430 Oryza nivara ONIVA07G26430 I 0.000
ONIVA08G08030 Oryza nivara ONIVA08G08030 I 0.000
OPUNC03G15320 Oryza punctata OPUNC03G15320 I 0.000
OPUNC05G23480 Oryza punctata OPUNC05G23480 I 0.000
OPUNC07G25100 Oryza punctata OPUNC07G25100 I 0.000
orange1.1g036145m.g Citrus sinensis orange1.1g036145m.g I 0.000
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I 0.000
ORGLA01G0211300 Oryza glaberrima ORGLA01G0211300 I 0.000
ORGLA03G0151500 Oryza glaberrima ORGLA03G0151500 I 0.000
ORGLA05G0223800 Oryza glaberrima ORGLA05G0223800 I 0.000
ORGLA07G0211000 Oryza glaberrima ORGLA07G0211000 I 0.000
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I 0.000
ORUFI03G16410 Oryza rufipogon ORUFI03G16410 I 0.000
ORUFI05G27780 Oryza rufipogon ORUFI05G27780 I 0.000
ORUFI07G27650 Oryza rufipogon ORUFI07G27650 I 0.000
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I 0.000
OS01G0667450 Oryza sativa OS01G0667450 I 0.000
OS03G0325600 Oryza sativa OS03G0325600 I 0.000
OS05G0564500 Oryza sativa OS05G0564500 I 0.000
WOX11 Oryza sativa OS07G0684900 I 0.000
WOX10 Oryza sativa OS08G0242400 I 0.000
Pavir.Ba00249 Panicum virgatum Pavir.Ba00249 I 0.000
Pavir.Ca00938 Panicum virgatum Pavir.Ca00938 I 0.000
Pavir.Eb02702 Panicum virgatum Pavir.Eb02702 I 0.000
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I 0.000
Pavir.Ia03448 Panicum virgatum Pavir.Ia03448 I 0.000
Pavir.Ib01521 Panicum virgatum Pavir.Ib01521 I 0.000
Pavir.J23422 Panicum virgatum Pavir.J23422 I 0.000
Pavir.J33010 Panicum virgatum Pavir.J33010 I 0.000
PDK_20s13009443g001 Phoenix dactylifera PDK_20s13009443g001 I 0.000
PDK_20s1465351g003 Phoenix dactylifera PDK_20s1465351g003 I 0.000
PGSC0003DMG400010725 Solanum tuberosum PGSC0003DMG400010725 I 0.000
PGSC0003DMG400027030 Solanum tuberosum PGSC0003DMG400027030 I 0.000
Pm010370 Prunus mume Pm010370 I 0.000
Pm025458 Prunus mume Pm025458 I 0.000
POPTR_0004s05090 Populus trichocarpa POPTR_0004s05090 I 0.000
POPTR_0011s05980 Populus trichocarpa POPTR_0011s05980 I 0.000
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I 0.000
POPTR_0019s05730 Populus trichocarpa POPTR_0019s05730 I 0.000
PRUPE_ppa019841mg Prunus persica PRUPE_ppa019841mg I 0.000
PRUPE_ppa026303mg Prunus persica PRUPE_ppa026303mg I 0.000
SapurV1A.0012s0880 Salix purpurea SapurV1A.0012s0880 I 0.000
SapurV1A.0270s0270 Salix purpurea SapurV1A.0270s0270 I 0.000
SapurV1A.0631s0110 Salix purpurea SapurV1A.0631s0110 I 0.000
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I 0.000
Sb01g036670 Sorghum bicolor Sb01g036670 I 0.000
Sb02g043300 Sorghum bicolor Sb02g043300 I 0.000
Sb07g007600 Sorghum bicolor Sb07g007600 I 0.000
Sb09g028562 Sorghum bicolor Sb09g028562 I 0.000
WOX8 Arabidopsis lyrata scaffold_800245.1 I 0.000
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.000
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.000
SELMODRAFT_417553 Selaginella moellendorffii SELMODRAFT_417553 I 0.000
SELMODRAFT_419270 Selaginella moellendorffii SELMODRAFT_419270 I 0.000
Si004249m.g Setaria italica Si004249m.g I 0.000
Si015065m.g Setaria italica Si015065m.g I 0.000
Si025013m.g Setaria italica Si025013m.g I 0.000
Si030836m.g Setaria italica Si030836m.g I 0.000
Si039112m.g Setaria italica Si039112m.g I 0.000
Solyc02g077390.1 Solanum lycopersicum Solyc02g077390.1 I 0.000
Solyc06g072890.1 Solanum lycopersicum Solyc06g072890.1 I 0.000
TCM_025805 Theobroma cacao TCM_025805 I 0.000
TCM_029776 Theobroma cacao TCM_029776 I 0.000
Thhalv10001099m.g Eutrema salsugineum Thhalv10001099m.g I 0.000
Thhalv10009654m.g Eutrema salsugineum Thhalv10009654m.g I 0.000
Thhalv10015651m.g Eutrema salsugineum Thhalv10015651m.g I 0.000
Thhalv10016784m.g Eutrema salsugineum Thhalv10016784m.g I 0.000
Thhalv10022222m.g Eutrema salsugineum Thhalv10022222m.g I 0.000
TRAES3BF022100010CFD_g Triticum aestivum TRAES3BF022100010CFD_g I 0.000
TRAES3BF079200050CFD_g Triticum aestivum TRAES3BF079200050CFD_g I 0.000
Traes_2BS_8A1FE01EE Triticum aestivum Traes_2BS_8A1FE01EE I 0.000
Traes_2DS_B5227B5F6 Triticum aestivum Traes_2DS_B5227B5F6 I 0.000
Traes_4AS_EC04D9E8A Triticum aestivum Traes_4AS_EC04D9E8A I 0.000
Traes_4DL_5E79CC79C Triticum aestivum Traes_4DL_5E79CC79C I 0.000
TRIUR3_34808 Triticum urartu TRIUR3_34808 I 0.000
TRIUR3_34876 Triticum urartu TRIUR3_34876 I 0.000
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I 0.000
VIT_10s0003g00560 Vitis vinifera VIT_10s0003g00560 I 0.000