TRB3 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT3G49850 T266467_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a telomeric DNA binding protein. In vitro, an N-terminal Myb domain enables it to interact with double-stranded telomeric repeats.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TRB2
M02314_2.00
Arabidopsis thaliana
WRMCCTAR

YTAGGKYW
PBM
Weirauch et al.(2014)
pTH7094
0.842 0.913
TRB2
M01083_2.00
Arabidopsis thaliana
HRMCCTAR

YTAGGKYD
PBM
Sullivan et al.(2014)
pTH7260
0.842 0.913
TRB2
M07157_2.00
Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN

NDDWTTAGGGYWWNDDDDD
Dap-seq
OMalley et al.(2016)
TBP3_col_a
0.842 0.913
TRB2
M07158_2.00
Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH

DRDTTAGGGYTWNDDDHBD
Dap-seq
OMalley et al.(2016)
TBP3_colamp_a
0.842 0.913
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR

YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.702 0.783
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG

CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.688 0.826
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G49850.1 Myb 5 56
AT3G49850.2 Myb 5 56

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I 0.870
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I 0.870
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I 0.870
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I 0.870
Carubv10017722m.g Capsella rubella Carubv10017722m.g I 0.870
Bra024438 Brassica rapa Bra024438 I 0.851
Bra037837 Brassica rapa Bra037837 I 0.851
Bra037839 Brassica rapa Bra037839 I 0.851
Carubv10026874m.g Capsella rubella Carubv10026874m.g I 0.851
Bo9g019040 Brassica oleracea Bo9g019040 I 0.851
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I 0.851
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I 0.851
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I 0.851
Bo3g096520 Brassica oleracea Bo3g096520 I 0.851
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I 0.842
TRB2 Arabidopsis thaliana AT5G67580 D 0.842
Bra029978 Brassica rapa Bra029978 I 0.835
Bo1g081300 Brassica oleracea Bo1g081300 I 0.835
cassava37744.valid.m1 Manihot esculenta cassava37744.valid.m1 I 0.812
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I 0.797
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I 0.797
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I 0.797
TCM_000807 Theobroma cacao TCM_000807 I 0.797
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I 0.797
Lus10019260.g Linum usitatissimum Lus10019260.g I 0.796
Lus10011546.g Linum usitatissimum Lus10011546.g I 0.796
29661.m000926 Ricinus communis 29661.m000926 I 0.778
POPTR_0014s01010 Populus trichocarpa POPTR_0014s01010 I 0.778
POPTR_0007s14920 Populus trichocarpa POPTR_0007s14920 I 0.778
SapurV1A.1368s0050 Salix purpurea SapurV1A.1368s0050 I 0.778
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I 0.778
SapurV1A.0235s0100 Salix purpurea SapurV1A.0235s0100 I 0.778
OB01G30760 Oryza brachyantha OB01G30760 I 0.774
Solyc01g106940.2 Solanum lycopersicum Solyc01g106940.2 I 0.755
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.747
OPUNC01G21220 Oryza punctata OPUNC01G21220 I 0.739
OMERI01G19510 Oryza meridionalis OMERI01G19510 I 0.739
ORGLA01G0168300 Oryza glaberrima ORGLA01G0168300 I 0.739
ONIVA01G23780 Oryza nivara ONIVA01G23780 I 0.739
ORUFI01G23880 Oryza rufipogon ORUFI01G23880 I 0.739
BGIOSGA003871 Oryza indica BGIOSGA003871 I 0.739
OS01G0589300 Oryza sativa OS01G0589300 I 0.739
OMERI01G19490 Oryza meridionalis OMERI01G19490 I 0.739
OLONG_011068 Oryza longistaminata OLONG_011068 I 0.739
EuGene.0500010080 Micromonas sp RCC299 EuGene.0500010080 I 0.739
LPERR01G18090 Leersia perrieri LPERR01G18090 I 0.739
OBART01G21150 Oryza barthii OBART01G21150 I 0.739
TCM_007242 Theobroma cacao TCM_007242 I 0.736
Gorai.005G230800 Gossypium raimondii Gorai.005G230800 I 0.736
mgf009594m Mimulus guttatus mgf009594m I 0.736
TRB1 Vitis vinifera VIT_03s0091g01030 I 0.736
AMTR_s00007p00193000 Amborella trichopoda AMTR_s00007p00193000 I 0.735
gene12682-v1.0-hybrid Fragaria vesca gene12682-v1.0-hybrid I 0.732
29912.m005376 Ricinus communis 29912.m005376 I 0.732
Ciclev10009173m.g Citrus clementina Ciclev10009173m.g I 0.732
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I 0.732
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I 0.726
Lus10012092.g Linum usitatissimum Lus10012092.g I 0.725
Lus10025203.g Linum usitatissimum Lus10025203.g I 0.725
gene05764-v1.0-hybrid Fragaria vesca gene05764-v1.0-hybrid I 0.721
Aquca_001_00028 Aquilegia coerulea Aquca_001_00028 I 0.720
PK00568.1 Cannabis sativa PK00568.1 I 0.720
VIT_11s0016g01890 Vitis vinifera VIT_11s0016g01890 I 0.720
Pm021139 Prunus mume Pm021139 I 0.713
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I 0.713
Pm027209 Prunus mume Pm027209 I 0.711
Eucgr.C00865 Eucalyptus grandis Eucgr.C00865 I 0.711
POPTR_0006s14940 Populus trichocarpa POPTR_0006s14940 I 0.711
PRUPE_ppa007796mg Prunus persica PRUPE_ppa007796mg I 0.711
SapurV1A.0087s0150 Salix purpurea SapurV1A.0087s0150 I 0.711
MDP0000265359 Malus domestica MDP0000265359 I 0.711
SELMODRAFT_413266 Selaginella moellendorffii SELMODRAFT_413266 I 0.711
SapurV1A.0108s0150 Salix purpurea SapurV1A.0108s0150 I 0.711
SELMODRAFT_426759 Selaginella moellendorffii SELMODRAFT_426759 I 0.711
Lus10027621.g Linum usitatissimum Lus10027621.g I 0.710
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I 0.709
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I 0.709
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I 0.709
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I 0.706
Ciclev10028926m.g Citrus clementina Ciclev10028926m.g I 0.702
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I 0.702
Bra018818 Brassica rapa Bra018818 I 0.702
Eucgr.I01053 Eucalyptus grandis Eucgr.I01053 I 0.702
Cucsa.298390 Cucumis sativus Cucsa.298390 I 0.702
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I 0.702
Carubv10009836m.g Capsella rubella Carubv10009836m.g I 0.702
TRB1 Arabidopsis thaliana AT1G49950 D 0.702
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I 0.702
Bo6g018740 Brassica oleracea Bo6g018740 I 0.702
PK19870.1 Cannabis sativa PK19870.1 I 0.702
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I 0.702
mgf011386m Mimulus guttatus mgf011386m I 0.702
cassava19326.valid.m1 Manihot esculenta cassava19326.valid.m1 I 0.702
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I 0.702
Lus10033775.g Linum usitatissimum Lus10033775.g I 0.702
POPTR_0009s09020 Populus trichocarpa POPTR_0009s09020 I 0.702
Lus10014653.g Linum usitatissimum Lus10014653.g I 0.702
orange1.1g022048m.g Citrus sinensis orange1.1g022048m.g I 0.702
Cla006547 Citrullus lanatus Cla006547 I 0.702
29812.m000204 Ricinus communis 29812.m000204 I 0.702
SapurV1A.0019s0460 Salix purpurea SapurV1A.0019s0460 I 0.702
EuGene.0000030935 Micromonas pusilla EuGene.0000030935 I 0.701
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I 0.695
Bo5g077530 Brassica oleracea Bo5g077530 I 0.695
EuGene.1300010252 Ostreococcus RCC809 EuGene.1300010252 I 0.695
Bra039650 Brassica rapa Bra039650 I 0.695
SELMODRAFT_49312 Selaginella moellendorffii SELMODRAFT_49312 I 0.694
SELMODRAFT_443975 Selaginella moellendorffii SELMODRAFT_443975 I 0.694
GSMUA_Achr7G01090_001 Musa acuminata GSMUA_Achr7G01090_001 I 0.692
MTR_8g494240 Medicago truncatula MTR_8g494240 I 0.691
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I 0.690
LjT25P15.150.nd Lotus japonicus LjT25P15.150.nd I 0.688
PK06103.1 Cannabis sativa PK06103.1 D 0.688
MDP0000239354 Malus domestica MDP0000239354 I 0.688
MDP0000234807 Malus domestica MDP0000234807 I 0.688
Ca_02232 Cicer arietinum Ca_02232 I 0.688
MTR_4g097130 Medicago truncatula MTR_4g097130 I 0.688
GLYMA11G05070 Glycine max GLYMA11G05070 I 0.688
MTR_5g015340 Medicago truncatula MTR_5g015340 I 0.688
GLYMA17G17370 Glycine max GLYMA17G17370 I 0.688
PRUPE_ppa009220mg Prunus persica PRUPE_ppa009220mg I 0.688
GLYMA05G22500 Glycine max GLYMA05G22500 I 0.688
Cla014248 Citrullus lanatus Cla014248 I 0.688
Ca_09355 Cicer arietinum Ca_09355 I 0.688
GLYMA01G40220 Glycine max GLYMA01G40220 I 0.688
Cucsa.103240 Cucumis sativus Cucsa.103240 I 0.688
Pm002374 Prunus mume Pm002374 I 0.688
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I 0.687
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I 0.687
Lus10030935.g Linum usitatissimum Lus10030935.g I 0.686
Lus10040111.g Linum usitatissimum Lus10040111.g I 0.686
AMTR_s00036p00166880 Amborella trichopoda AMTR_s00036p00166880 I 0.685
Pavir.Ea02064 Panicum virgatum Pavir.Ea02064 I 0.684
Si002403m.g Setaria italica Si002403m.g I 0.684
Pavir.J27218 Panicum virgatum Pavir.J27218 I 0.684
Bra036035 Brassica rapa Bra036035 I 0.682
MTR_2g031870 Medicago truncatula MTR_2g031870 I 0.681
MTR_1g041765 Medicago truncatula MTR_1g041765 I 0.681
GSMUA_Achr6G31260_001 Musa acuminata GSMUA_Achr6G31260_001 I 0.681
gene25445-v1.0-hybrid Fragaria vesca gene25445-v1.0-hybrid I 0.681
Ca_08043 Cicer arietinum Ca_08043 I 0.681
GLYMA15G14320 Glycine max GLYMA15G14320 I 0.681
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I 0.681
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I 0.681
GLYMA09G03390 Glycine max GLYMA09G03390 I 0.681
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I 0.679
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I 0.679
Eucgr.H02312 Eucalyptus grandis Eucgr.H02312 I 0.679
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.679
Sb03g026470 Sorghum bicolor Sb03g026470 I 0.675
GRMZM2G087817 Zea mays GRMZM2G087817 I 0.675
GSMUA_Achr6G30000_001 Musa acuminata GSMUA_Achr6G30000_001 I 0.675
GRMZM2G136887 Zea mays GRMZM2G136887 I 0.675
mgf007122m Mimulus guttatus mgf007122m I 0.671
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I 0.671
Bra012919 Brassica rapa Bra012919 I 0.670
Bo7g099090 Brassica oleracea Bo7g099090 I 0.670
evm.TU.supercontig_25.81 Carica papaya evm.TU.supercontig_25.81 I 0.666
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I 0.665
SELMODRAFT_49297 Selaginella moellendorffii SELMODRAFT_49297 I 0.665
SELMODRAFT_49296 Selaginella moellendorffii SELMODRAFT_49296 I 0.665
Bo8g079140 Brassica oleracea Bo8g079140 N 0.662