RVE4 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G02840 T266512_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a MYB-like transcription factor similar to CIRCADIAN CLOCK-ASSOCIATED1 (CCA1) and ELONGATED HYPOCOTYL (LHY). Involved in the regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RVE4
M07117_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LCL1_colamp_a
(Direct) (Direct)
RVE4
M07118_2.00
Arabidopsis thaliana
NAAAATATCT

AGATATTTTN
Dap-seq
OMalley et al.(2016)
LCL1_col
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RVE8
M01074_2.00
Arabidopsis thaliana
NNNRWATCNN

NNGATWYNNN
PBM
Sullivan et al.(2014)
pTH7136
0.909 0.978
RVE8
M07069_2.00
Arabidopsis thaliana
NHNWAAATATCT

AGATATTTWNDN
Dap-seq
OMalley et al.(2016)
At3g09600_col_a
0.909 0.978
RVE8
M07070_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a
0.909 0.978
PK02532.1
M02347_2.00
Cannabis sativa
WAATATCTN

NAGATATTW
PBM
Weirauch et al.(2014)
pTH9579
0.901 0.957
RVE6
M01081_2.00
Arabidopsis thaliana
AATATCTD

HAGATATT
PBM
Sullivan et al.(2014)
pTH7151
0.891 0.935
RVE6
M07138_2.00
Arabidopsis thaliana
NNAAAATATCT

AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At5g52660_col_a
0.891 0.935
RVE6
M07139_2.00
Arabidopsis thaliana
NNNWAAATATCT

AGATATTTWNNN
Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a
0.891 0.935
mybG
M02319_2.00
Dictyostelium discoideum
WAATATCT

AGATATTW
PBM
Weirauch et al.(2014)
pTH5362
0.818 0.870
RVE5
M01079_2.00
Arabidopsis thaliana
NWAATATCHN

NDGATATTWN
PBM
Sullivan et al.(2014)
pTH7138
0.795 0.870
RVE5
M07100_2.00
Arabidopsis thaliana
NNAAAATATCT

AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At4g01280_col_a
0.795 0.870
RVE5
M07101_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a
0.795 0.870
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN

NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.706 0.696
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT

AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.670 0.652
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN

NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.670 0.652
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW

WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G02840.1 Myb 48 93
AT5G02840.2 Myb 48 93
AT5G02840.3 Myb 48 93
AT5G02840.4 Myb 48 93
AT5G02840.5 Myb 48 93

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28281.m000379 Ricinus communis 28281.m000379 I 0.000
29889.m003372 Ricinus communis 29889.m003372 I 0.000
AMTR_s00038p00173360 Amborella trichopoda AMTR_s00038p00173360 I 0.000
AMTR_s00045p00052450 Amborella trichopoda AMTR_s00045p00052450 I 0.000
Aquca_003_00380 Aquilegia coerulea Aquca_003_00380 I 0.000
Aquca_008_00132 Aquilegia coerulea Aquca_008_00132 I 0.000
Aquca_010_00201 Aquilegia coerulea Aquca_010_00201 I 0.000
CMTA3 Arabidopsis thaliana AT2G22300 D 0.000
EICBP.B Arabidopsis thaliana AT5G09410 D 0.000
CMTA2 Arabidopsis thaliana AT5G64220 D 0.000
BGIOSGA011302 Oryza indica BGIOSGA011302 I 0.000
BGIOSGA012779 Oryza indica BGIOSGA012779 I 0.000
BGIOSGA023886 Oryza indica BGIOSGA023886 I 0.000
BGIOSGA032809 Oryza indica BGIOSGA032809 I 0.000
Bo4g136970 Brassica oleracea Bo4g136970 I 0.000
Bo4g149510 Brassica oleracea Bo4g149510 I 0.000
Bo9g018010 Brassica oleracea Bo9g018010 I 0.000
Bo9g174050 Brassica oleracea Bo9g174050 I 0.000
Bostr.0568s0382 Boechera stricta Bostr.0568s0382 I 0.000
Bostr.13129s0055 Boechera stricta Bostr.13129s0055 I 0.000
Bostr.5022s0003 Boechera stricta Bostr.5022s0003 I 0.000
Bra009382 Brassica rapa Bra009382 I 0.000
Bra030248 Brassica rapa Bra030248 I 0.000
Bra037769 Brassica rapa Bra037769 I 0.000
Bra038534 Brassica rapa Bra038534 I 0.000
BRADI1G21372 Brachypodium distachyon BRADI1G21372 I 0.000
BRADI1G60817 Brachypodium distachyon BRADI1G60817 I 0.000
BRADI1G71810 Brachypodium distachyon BRADI1G71810 I 0.000
BRADI3G23800 Brachypodium distachyon BRADI3G23800 I 0.000
Cagra.0248s0103 Capsella grandiflora Cagra.0248s0103 I 0.000
Cagra.1365s0113 Capsella grandiflora Cagra.1365s0113 I 0.000
Cagra.2300s0004 Capsella grandiflora Cagra.2300s0004 I 0.000
Carubv10000120m.g Capsella rubella Carubv10000120m.g I 0.000
Carubv10024738m.g Capsella rubella Carubv10024738m.g I 0.000
Carubv10025787m.g Capsella rubella Carubv10025787m.g I 0.000
cassava1518.valid.m1 Manihot esculenta cassava1518.valid.m1 I 0.000
Ca_05255 Cicer arietinum Ca_05255 I 0.000
chr4.CM0182.510.nc Lotus japonicus chr4.CM0182.510.nc I 0.000
chr4.LjT13D08.100.nd Lotus japonicus chr4.LjT13D08.100.nd I 0.000
chr6.CM0314.100.nd Lotus japonicus chr6.CM0314.100.nd I 0.000
Ciclev10004234m.g Citrus clementina Ciclev10004234m.g I 0.000
Ciclev10024764m.g Citrus clementina Ciclev10024764m.g I 0.000
Ciclev10029792m.g Citrus clementina Ciclev10029792m.g I 0.000
Cla013051 Citrullus lanatus Cla013051 I 0.000
Cla018421 Citrullus lanatus Cla018421 I 0.000
Cucsa.217940 Cucumis sativus Cucsa.217940 I 0.000
Eucgr.H04783 Eucalyptus grandis Eucgr.H04783 I 0.000
Eucgr.I02632 Eucalyptus grandis Eucgr.I02632 I 0.000
Eucgr.I02662 Eucalyptus grandis Eucgr.I02662 I 0.000
evm.TU.supercontig_146.41 Carica papaya evm.TU.supercontig_146.41 I 0.000
evm.TU.supercontig_213.9 Carica papaya evm.TU.supercontig_213.9 I 0.000
F775_11311 Aegilops tauschii F775_11311 I 0.000
F775_29292 Aegilops tauschii F775_29292 I 0.000
CAMTA3 Arabidopsis lyrata fgenesh2_kg.4__153__AT2G22300.2 I 0.000
EICBP.B Arabidopsis lyrata fgenesh2_kg.6__888__AT5G09410.2 I 0.000
gene29100-v1.0-hybrid Fragaria vesca gene29100-v1.0-hybrid I 0.000
GLYMA05G24430 Glycine max GLYMA05G24430 I 0.000
GLYMA05G31190 Glycine max GLYMA05G31190 I 0.000
GLYMA08G07680 Glycine max GLYMA08G07680 I 0.000
GLYMA08G14370 Glycine max GLYMA08G14370 I 0.000
GLYMA08G19101 Glycine max GLYMA08G19101 I 0.000
GLYMA15G05900 Glycine max GLYMA15G05900 I 0.000
GLYMA17G04310 Glycine max GLYMA17G04310 I 0.000
Gorai.005G220600 Gossypium raimondii Gorai.005G220600 I 0.000
Gorai.008G089900 Gossypium raimondii Gorai.008G089900 I 0.000
Gorai.011G204700 Gossypium raimondii Gorai.011G204700 I 0.000
Gorai.013G061100 Gossypium raimondii Gorai.013G061100 I 0.000
GRMZM2G341747 Zea mays GRMZM2G341747 I 0.000
GRMZM2G431243 Zea mays GRMZM2G431243 I 0.000
GRMZM2G447551 Zea mays GRMZM2G447551 I 0.000
GSMUA_Achr1G21540_001 Musa acuminata GSMUA_Achr1G21540_001 I 0.000
GSMUA_Achr3G08460_001 Musa acuminata GSMUA_Achr3G08460_001 I 0.000
GSMUA_Achr3G21310_001 Musa acuminata GSMUA_Achr3G21310_001 I 0.000
GSMUA_Achr6G10390_001 Musa acuminata GSMUA_Achr6G10390_001 I 0.000
GSMUA_AchrUn_randomG02100_001 Musa acuminata GSMUA_AchrUn_randomG02100_001 I 0.000
GSMUA_AchrUn_randomG08930_001 Musa acuminata GSMUA_AchrUn_randomG08930_001 I 0.000
gw1.188.72.1 Physcomitrella patens gw1.188.72.1 I 0.000
LPERR03G05920 Leersia perrieri LPERR03G05920 I 0.000
LPERR03G17060 Leersia perrieri LPERR03G17060 I 0.000
LPERR07G19680 Leersia perrieri LPERR07G19680 I 0.000
LPERR10G05550 Leersia perrieri LPERR10G05550 I 0.000
Lus10003405.g Linum usitatissimum Lus10003405.g I 0.000
Lus10041704.g Linum usitatissimum Lus10041704.g I 0.000
MDP0000139862 Malus domestica MDP0000139862 I 0.000
MDP0000290409 Malus domestica MDP0000290409 I 0.000
mgf010601m Mimulus guttatus mgf010601m I 0.000
mgf015897m Mimulus guttatus mgf015897m I 0.000
mgf024932m Mimulus guttatus mgf024932m I 0.000
MLOC_38704 Hordeum vulgare MLOC_38704 I 0.000
MLOC_63299 Hordeum vulgare MLOC_63299 I 0.000
MTR_2g008840 Medicago truncatula MTR_2g008840 I 0.000
MTR_4g094215 Medicago truncatula MTR_4g094215 I 0.000
MTR_8g090205 Medicago truncatula MTR_8g090205 I 0.000
OB03G16740 Oryza brachyantha OB03G16740 I 0.000
OB03G29080 Oryza brachyantha OB03G29080 I 0.000
OB07G28190 Oryza brachyantha OB07G28190 I 0.000
OB10G16130 Oryza brachyantha OB10G16130 I 0.000
OBART03G06570 Oryza barthii OBART03G06570 I 0.000
OBART03G19880 Oryza barthii OBART03G19880 I 0.000
OBART07G22710 Oryza barthii OBART07G22710 I 0.000
OBART10G08060 Oryza barthii OBART10G08060 I 0.000
OGLUM03G06680 Oryza glumaepatula OGLUM03G06680 I 0.000
OGLUM03G20490 Oryza glumaepatula OGLUM03G20490 I 0.000
OGLUM07G22660 Oryza glumaepatula OGLUM07G22660 I 0.000
OGLUM10G07770 Oryza glumaepatula OGLUM10G07770 I 0.000
OLONG_001033 Oryza longistaminata OLONG_001033 I 0.000
OLONG_003971 Oryza longistaminata OLONG_003971 I 0.000
OLONG_004418 Oryza longistaminata OLONG_004418 I 0.000
OLONG_018130 Oryza longistaminata OLONG_018130 I 0.000
OLONG_019207 Oryza longistaminata OLONG_019207 I 0.000
OMERI03G17850 Oryza meridionalis OMERI03G17850 I 0.000
ONIVA02G06230 Oryza nivara ONIVA02G06230 I 0.000
ONIVA03G21570 Oryza nivara ONIVA03G21570 I 0.000
ONIVA07G22160 Oryza nivara ONIVA07G22160 I 0.000
ONIVA10G07200 Oryza nivara ONIVA10G07200 I 0.000
ONIVA10G07730 Oryza nivara ONIVA10G07730 I 0.000
OPUNC03G06340 Oryza punctata OPUNC03G06340 I 0.000
OPUNC03G18730 Oryza punctata OPUNC03G18730 I 0.000
OPUNC07G21310 Oryza punctata OPUNC07G21310 I 0.000
OPUNC10G06950 Oryza punctata OPUNC10G06950 I 0.000
orange1.1g001365m.g Citrus sinensis orange1.1g001365m.g I 0.000
orange1.1g001406m.g Citrus sinensis orange1.1g001406m.g I 0.000
orange1.1g001759m.g Citrus sinensis orange1.1g001759m.g I 0.000
ORGLA03G0064000 Oryza glaberrima ORGLA03G0064000 I 0.000
ORGLA07G0175700 Oryza glaberrima ORGLA07G0175700 I 0.000
ORGLA10G0066800 Oryza glaberrima ORGLA10G0066800 I 0.000
ORGLA10G0167300 Oryza glaberrima ORGLA10G0167300 I 0.000
ORUFI03G06510 Oryza rufipogon ORUFI03G06510 I 0.000
ORUFI03G20520 Oryza rufipogon ORUFI03G20520 I 0.000
ORUFI07G23760 Oryza rufipogon ORUFI07G23760 I 0.000
ORUFI10G08490 Oryza rufipogon ORUFI10G08490 I 0.000
OS03G0191000 Oryza sativa OS03G0191000 I 0.000
OS10G0375600 Oryza sativa OS10G0375600 I 0.000
Pavir.Ba00386 Panicum virgatum Pavir.Ba00386 I 0.000
Pavir.Ia02749 Panicum virgatum Pavir.Ia02749 I 0.000
Pavir.Ia03131 Panicum virgatum Pavir.Ia03131 I 0.000
Pavir.Ib00572 Panicum virgatum Pavir.Ib00572 I 0.000
Pavir.Ib01843 Panicum virgatum Pavir.Ib01843 I 0.000
Pavir.Ib02991 Panicum virgatum Pavir.Ib02991 I 0.000
Pavir.J35200 Panicum virgatum Pavir.J35200 I 0.000
Pavir.J38535 Panicum virgatum Pavir.J38535 I 0.000
PK04004.1 Cannabis sativa PK04004.1 I 0.000
PK28233.1 Cannabis sativa PK28233.1 I 0.000
Pm002007 Prunus mume Pm002007 I 0.000
Pm008450 Prunus mume Pm008450 I 0.000
POPTR_0005s07660 Populus trichocarpa POPTR_0005s07660 I 0.000
POPTR_0007s05410 Populus trichocarpa POPTR_0007s05410 I 0.000
SapurV1A.0039s0030 Salix purpurea SapurV1A.0039s0030 I 0.000
SapurV1A.0072s0470 Salix purpurea SapurV1A.0072s0470 I 0.000
SapurV1A.0403s0170 Salix purpurea SapurV1A.0403s0170 I 0.000
Sb0012s010230 Sorghum bicolor Sb0012s010230 I 0.000
Sb01g033650 Sorghum bicolor Sb01g033650 I 0.000
Sb01g044480 Sorghum bicolor Sb01g044480 I 0.000
Sb02g039710 Sorghum bicolor Sb02g039710 I 0.000
scaffold_803130.1 Arabidopsis lyrata scaffold_803130.1 I 0.000
SELMODRAFT_411325 Selaginella moellendorffii SELMODRAFT_411325 N 0.000
SELMODRAFT_413101 Selaginella moellendorffii SELMODRAFT_413101 I 0.000
SELMODRAFT_441667 Selaginella moellendorffii SELMODRAFT_441667 I 0.000
Si028797m.g Setaria italica Si028797m.g I 0.000
Si034046m.g Setaria italica Si034046m.g I 0.000
Si034054m.g Setaria italica Si034054m.g I 0.000
Si034076m.g Setaria italica Si034076m.g I 0.000
Solyc01g105230.2 Solanum lycopersicum Solyc01g105230.2 I 0.000
Solyc04g056270.2 Solanum lycopersicum Solyc04g056270.2 I 0.000
TCM_001108 Theobroma cacao TCM_001108 I 0.000
TCM_007482 Theobroma cacao TCM_007482 I 0.000
TCM_021468 Theobroma cacao TCM_021468 I 0.000
Thhalv10000026m.g Eutrema salsugineum Thhalv10000026m.g I 0.000
Thhalv10003564m.g Eutrema salsugineum Thhalv10003564m.g I 0.000
Thhalv10012552m.g Eutrema salsugineum Thhalv10012552m.g I 0.000
Traes_2AS_506D953C1 Triticum aestivum Traes_2AS_506D953C1 I 0.000
Traes_2DS_D05DC56BD Triticum aestivum Traes_2DS_D05DC56BD I 0.000
Traes_4AL_2F7E6536A Triticum aestivum Traes_4AL_2F7E6536A I 0.000
Traes_4BL_A37F6FD08 Triticum aestivum Traes_4BL_A37F6FD08 I 0.000
Traes_4DL_C2F35966E Triticum aestivum Traes_4DL_C2F35966E I 0.000
Traes_5BL_92902F993 Triticum aestivum Traes_5BL_92902F993 I 0.000
TRIUR3_23040 Triticum urartu TRIUR3_23040 I 0.000
TRIUR3_23792 Triticum urartu TRIUR3_23792 I 0.000
VIT_05s0020g00630 Vitis vinifera VIT_05s0020g00630 I 0.000
CAMTA3 Vitis vinifera VIT_07s0141g00250 I 0.000