RVE4 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G02840 T266512_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE4
M07117_2.00		 Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a		 (Direct) (Direct)
RVE4
M07118_2.00		 Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.909 0.978
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.909 0.978
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.909 0.978
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.901 0.957
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.891 0.935
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.891 0.935
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.891 0.935
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.870
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.795 0.870
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.795 0.870
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.795 0.870
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.696
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.652
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.652
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G02840.1 Myb 48 93
AT5G02840.2 Myb 48 93
AT5G02840.3 Myb 48 93
AT5G02840.4 Myb 48 93
AT5G02840.5 Myb 48 93

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

Invalid Input OrderBy

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action