MYB33 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G06100 T266519_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the myb family of transcription factors (MYB33), contains Pfam profile: PF00249 myb DNA-binding domain. Double mutants with MYB65 are male sterile- anthers are small, pollen development is defective. Spatial expression appears to be under the control of miR159, contains a target site for this micro RNA. When the target site is mutated, expression is detected in leaves, roots, anther filament, pistil. The expression of a translational fusion is specific to anther locules in contrast to constructs lacking the miR159 target site. Phenotype is conditional and can be restored by lower temperature or higher light intensity.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB33
M02306_2.00		 Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD		 PBM
Weirauch et al.(2014)
pTH8204		 (Direct) (Direct)
MYB33
M07120_2.00		 Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB33_col_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATMYB65
M01076_2.00 		Arabidopsis thaliana
HAACNRHHN
NDDYNGTTD		 PBM
Sullivan et al.(2014)
pTH7084 		0.861 0.902
ATMYB65
M07076_2.00 		Arabidopsis thaliana
DHHNTAACBGHMW
WKDCVGTTANDDH		 Dap-seq
OMalley et al.(2016)
MYB65_col200_a 		0.861 0.902
ATMYB65
M07077_2.00 		Arabidopsis thaliana
NTAACYGHMWHNDHN
NDHNDWKDCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB65_colamp_a 		0.861 0.902
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.831 0.859
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.831 0.859
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.831 0.859
myb.Ph3
M02704_2.00 		Petunia x hybrida
WAACNGTYW
WRACNGTTW		 SELEX
Mathelier et al.(2014)
MA0054.1 		0.756 0.793
myb.Ph3
M11070_2.00 		Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY		 Transfac
Matys et al.(2006)
P$MYBPH3_01 		0.756 0.793
myb.Ph3
M11071_2.00 		Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS		 Transfac
Matys et al.(2006)
P$MYBPH3_02 		0.756 0.793
Q9FR42_TOBAC
M11076_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBAS1_01 		0.754 0.783
MYB101
M07051_2.00 		Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN		 Dap-seq
OMalley et al.(2016)
MYB101_col_a 		0.741 0.750
MYB101
M07052_2.00 		Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH		 Dap-seq
OMalley et al.(2016)
MYB101_colamp_a 		0.741 0.750
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02306_2.00 Myb 34 81
M02306_2.00 Myb 87 131

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G06100.1 Myb 34 81
AT5G06100.1 Myb 87 131
AT5G06100.2 Myb 34 81
AT5G06100.2 Myb 87 131
AT5G06100.3 Myb 34 81
AT5G06100.3 Myb 87 131
AT5G06100.4 Myb 34 81
AT5G06100.4 Myb 87 131
AT5G06100.5 Myb 34 81
AT5G06100.5 Myb 87 131

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

Invalid Input OrderBy

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action