AT5G28300 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G28300 T266543_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G28300
M00880_2.00		 Arabidopsis thaliana
NNNNRCNN
NNGYNNNN		 PBM
Franco-Zorrilla et al.(2014)
At5g28300		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00880_2.00 Myb 487 526

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G28300.1 Myb 487 526

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

2 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.6__2781__AT5G28300.1 Arabidopsis lyrata fgenesh2_kg.6__2781__AT5G28300.1 I 0.820
OLONG_014459 Oryza longistaminata OLONG_014459 I 0.681