CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TT2
(
Arabidopsis thaliana
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
AT5G35550
T266545_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB111
M00882_2.00
Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB111
0.734
0.742
GRMZM2G005066
M11056_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$C1_Q2
0.695
0.688
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.682
0.731
MYB3
M02288_2.00
Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN
PBM
Weirauch et al.(2014)
pTH7125
0.677
0.710
MYB4
M02303_2.00
Arabidopsis thaliana
YACCWACY
RGTWGGTR
PBM
Weirauch et al.(2014)
pTH7075
0.677
0.699
MYB4
M07115_2.00
Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN
Dap-seq
OMalley et al.(2016)
MYB4_col200_a
0.677
0.699
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G35550.1
Myb
16
63
RGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYL
AT5G35550.1
Myb
69
114
RGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNL
AT5G35550.2
Myb
43
66
IVLAHIKGLKRCGKSCRLRWKNYL
AT5G35550.2
Myb
72
117
RGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNL
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis thaliana
TFs
676 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy