GLK2 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G44190 T266555_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GPRI1
M00874_2.00
Arabidopsis thaliana
NNDATHN

NDATHNN
PBM
Franco-Zorrilla et al.(2014)
GLK1
0.791 0.894
APRR2
M02300_2.00
Arabidopsis thaliana
NNRNWATCNN

NNGATWNYNN
PBM
Weirauch et al.(2014)
pTH7102
0.719 0.872
ARR1
M02297_2.00
Arabidopsis thaliana
NAAGATHCKN

NMGDATCTTN
PBM
Weirauch et al.(2014)
pTH8590
0.672 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G44190.1 Myb 149 199
AT5G44190.2 Myb 149 199

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

158 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I 0.909
Bostr.3148s0040 Boechera stricta Bostr.3148s0040 I 0.909
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I 0.909
Carubv10026528m.g Capsella rubella Carubv10026528m.g I 0.909
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I 0.909
Bo7g067200 Brassica oleracea Bo7g067200 I 0.847
Bra033726 Brassica rapa Bra033726 I 0.847
Eucgr.K01056 Eucalyptus grandis Eucgr.K01056 I 0.829
MTR_4g078810 Medicago truncatula MTR_4g078810 I 0.800
Lus10033642.g Linum usitatissimum Lus10033642.g I 0.791
Cucsa.087530 Cucumis sativus Cucsa.087530 I 0.791
Cla003791 Citrullus lanatus Cla003791 I 0.791
Lus10018649.g Linum usitatissimum Lus10018649.g I 0.791
Lus10039883.g Linum usitatissimum Lus10039883.g I 0.791
GPRI1 Arabidopsis lyrata fgenesh2_kg.3__3588__AT2G20570.1 I 0.791
Carubv10014114m.g Capsella rubella Carubv10014114m.g I 0.791
Bostr.7903s0106 Boechera stricta Bostr.7903s0106 I 0.791
Cagra.2516s0014 Capsella grandiflora Cagra.2516s0014 I 0.791
GPRI1 Arabidopsis thaliana AT2G20570 D 0.791
GLYMA13G37010 Glycine max GLYMA13G37010 I 0.789
MTR_2g090675 Medicago truncatula MTR_2g090675 I 0.789
Ca_11268 Cicer arietinum Ca_11268 I 0.789
GPRI1 Vitis vinifera VIT_12s0028g03100 I 0.789
Ca_02452 Cicer arietinum Ca_02452 I 0.789
GLYMA12G33430 Glycine max GLYMA12G33430 I 0.789
Solyc07g053630.2 Solanum lycopersicum Solyc07g053630.2 I 0.789
GLYMA06G44330 Glycine max GLYMA06G44330 I 0.789
GLYMA12G13430 Glycine max GLYMA12G13430 I 0.789
PGSC0003DMG400009378 Solanum tuberosum PGSC0003DMG400009378 I 0.789
TCM_008193 Theobroma cacao TCM_008193 I 0.771
Gorai.002G020300 Gossypium raimondii Gorai.002G020300 I 0.771
PRUPE_ppa014599mg Prunus persica PRUPE_ppa014599mg I 0.771
SapurV1A.1950s0030 Salix purpurea SapurV1A.1950s0030 I 0.771
MDP0000225179 Malus domestica MDP0000225179 I 0.771
POPTR_0017s04720 Populus trichocarpa POPTR_0017s04720 I 0.771
Gorai.012G126600 Gossypium raimondii Gorai.012G126600 I 0.771
cassava43649.valid.m1 Manihot esculenta cassava43649.valid.m1 I 0.771
cassava43650.valid.m1 Manihot esculenta cassava43650.valid.m1 I 0.771
PK27491.1 Cannabis sativa PK27491.1 I 0.771
MDP0000526864 Malus domestica MDP0000526864 I 0.771
29983.m003131 Ricinus communis 29983.m003131 I 0.771
gene17750-v1.0-hybrid Fragaria vesca gene17750-v1.0-hybrid I 0.771
Pm014123 Prunus mume Pm014123 I 0.771
Ciclev10015266m.g Citrus clementina Ciclev10015266m.g I 0.771
AMTR_s00058p00133630 Amborella trichopoda AMTR_s00058p00133630 I 0.771
POPTR_0007s01230 Populus trichocarpa POPTR_0007s01230 I 0.771
Bra036015 Brassica rapa Bra036015 I 0.771
orange1.1g013528m.g Citrus sinensis orange1.1g013528m.g I 0.771
SapurV1A.0693s0070 Salix purpurea SapurV1A.0693s0070 I 0.771
SapurV1A.0118s0260 Salix purpurea SapurV1A.0118s0260 I 0.771
chr3.CM0160.680.nd Lotus japonicus chr3.CM0160.680.nd I 0.767
Ciclev10007648m.g Citrus clementina Ciclev10007648m.g I 0.758
orange1.1g005719m.g Citrus sinensis orange1.1g005719m.g I 0.758
cassava9823.m1 Manihot esculenta cassava9823.m1 I 0.756
mgf007181m Mimulus guttatus mgf007181m I 0.753
mgf012846m Mimulus guttatus mgf012846m I 0.753
mgf004257m Mimulus guttatus mgf004257m I 0.749
Thhalv10001986m.g Eutrema salsugineum Thhalv10001986m.g I 0.742
PGSC0003DMG400021857 Solanum tuberosum PGSC0003DMG400021857 I 0.738
PDK_20s1662851g001 Phoenix dactylifera PDK_20s1662851g001 I 0.738
29848.m004559 Ricinus communis 29848.m004559 I 0.731
Cla008926 Citrullus lanatus Cla008926 I 0.729
Cucsa.321580 Cucumis sativus Cucsa.321580 I 0.729
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I 0.726
PK19826.1 Cannabis sativa PK19826.1 I 0.726
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I 0.726
Pm014733 Prunus mume Pm014733 I 0.726
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I 0.726
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I 0.726
30054.m000786 Ricinus communis 30054.m000786 I 0.719
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I 0.719
APRR2 Arabidopsis thaliana AT4G18020 D 0.719
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I 0.718
MDP0000237396 Malus domestica MDP0000237396 I 0.712
OBART03G02540 Oryza barthii OBART03G02540 I 0.711
F775_20285 Aegilops tauschii F775_20285 I 0.711
BRADI1G43710 Brachypodium distachyon BRADI1G43710 I 0.711
ORUFI06G15000 Oryza rufipogon ORUFI06G15000 I 0.711
OMERI06G15340 Oryza meridionalis OMERI06G15340 I 0.711
ONIVA06G16920 Oryza nivara ONIVA06G16920 I 0.711
BGIOSGA022875 Oryza indica BGIOSGA022875 I 0.711
OPUNC06G13180 Oryza punctata OPUNC06G13180 I 0.711
ORGLA06G0126200 Oryza glaberrima ORGLA06G0126200 I 0.711
GLK1 Oryza sativa OS06G0348800 I 0.711
OGLUM06G15080 Oryza glumaepatula OGLUM06G15080 I 0.711
Si006400m.g Setaria italica Si006400m.g I 0.711
MLOC_43537 Hordeum vulgare MLOC_43537 I 0.711
LPERR06G12880 Leersia perrieri LPERR06G12880 I 0.711
Traes_7DL_58DDB90E3 Triticum aestivum Traes_7DL_58DDB90E3 I 0.711
OB06G22250 Oryza brachyantha OB06G22250 I 0.711
Pavir.Db01285 Panicum virgatum Pavir.Db01285 I 0.711
Sb10g008400 Sorghum bicolor Sb10g008400 I 0.711
Lus10011044.g Linum usitatissimum Lus10011044.g I 0.710
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I 0.706
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I 0.702
Sb03g000400 Sorghum bicolor Sb03g000400 I 0.700
Si001336m.g Setaria italica Si001336m.g I 0.700
GRMZM2G087804 Zea mays GRMZM2G087804 I 0.700
Pavir.Eb00063 Panicum virgatum Pavir.Eb00063 I 0.700
MTR_1g013170 Medicago truncatula MTR_1g013170 I 0.699
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I 0.696
BRADI2G08287 Brachypodium distachyon BRADI2G08287 I 0.693
SELMODRAFT_447635 Selaginella moellendorffii SELMODRAFT_447635 I 0.693
Pavir.Ea00014 Panicum virgatum Pavir.Ea00014 I 0.692
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I 0.692
Lus10040109.g Linum usitatissimum Lus10040109.g I 0.690
Bo7g003410 Brassica oleracea Bo7g003410 I 0.687
Bo8g102300 Brassica oleracea Bo8g102300 I 0.687
Bra031129 Brassica rapa Bra031129 I 0.687
Bo1g019180 Brassica oleracea Bo1g019180 I 0.685
Bra013279 Brassica rapa Bra013279 I 0.685
Bra013278 Brassica rapa Bra013278 I 0.685
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I 0.685
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I 0.685
Bra013277 Brassica rapa Bra013277 I 0.685
Bo7g105690 Brassica oleracea Bo7g105690 I 0.685
Bra012623 Brassica rapa Bra012623 I 0.685
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I 0.684
Gorai.008G155000 Gossypium raimondii Gorai.008G155000 I 0.682
TRAES3BF062500050CFD_g Triticum aestivum TRAES3BF062500050CFD_g I 0.682
OMERI01G08840 Oryza meridionalis OMERI01G08840 I 0.682
ONIVA01G11450 Oryza nivara ONIVA01G11450 I 0.682
OPUNC01G08680 Oryza punctata OPUNC01G08680 I 0.682
OGLUM01G10130 Oryza glumaepatula OGLUM01G10130 I 0.682
LPERR01G08320 Leersia perrieri LPERR01G08320 I 0.682
GSMUA_Achr10G26160_001 Musa acuminata GSMUA_Achr10G26160_001 I 0.682
GSMUA_Achr7G11040_001 Musa acuminata GSMUA_Achr7G11040_001 I 0.682
GLK2 Oryza sativa OS01G0239000 I 0.682
ORUFI01G09620 Oryza rufipogon ORUFI01G09620 I 0.682
Aquca_051_00026 Aquilegia coerulea Aquca_051_00026 I 0.682
Eucgr.A01857 Eucalyptus grandis Eucgr.A01857 I 0.682
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I 0.678
GSMUA_Achr11G08310_001 Musa acuminata GSMUA_Achr11G08310_001 I 0.678
TCM_015780 Theobroma cacao TCM_015780 I 0.677
mgf014879m Mimulus guttatus mgf014879m I 0.676
gene10041-v1.0-hybrid Fragaria vesca gene10041-v1.0-hybrid I 0.674
APRR2 Vitis vinifera VIT_02s0012g00570 I 0.673
Bo1g055180 Brassica oleracea Bo1g055180 I 0.672
Carubv10007581m.g Capsella rubella Carubv10007581m.g I 0.672
Bra033527 Brassica rapa Bra033527 I 0.672
Lus10016846.g Linum usitatissimum Lus10016846.g I 0.672
Lus10037719.g Linum usitatissimum Lus10037719.g I 0.672
ARR2 Arabidopsis lyrata scaffold_702902.1 I 0.672
Bostr.30275s0051 Boechera stricta Bostr.30275s0051 I 0.672
Thhalv10024686m.g Eutrema salsugineum Thhalv10024686m.g I 0.672
Cagra.0053s0018 Capsella grandiflora Cagra.0053s0018 I 0.672
GSMUA_Achr9G16610_001 Musa acuminata GSMUA_Achr9G16610_001 I 0.672
Ca_09080 Cicer arietinum Ca_09080 I 0.671
Lus10005340.g Linum usitatissimum Lus10005340.g I 0.671
Lus10041020.g Linum usitatissimum Lus10041020.g I 0.671
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I 0.669
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I 0.666
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I 0.666
MDP0000248863 Malus domestica MDP0000248863 I 0.663
Bostr.0556s0001 Boechera stricta Bostr.0556s0001 I 0.663
Pavir.J10177 Panicum virgatum Pavir.J10177 N 0.661
Pavir.Db00757 Panicum virgatum Pavir.Db00757 N 0.661