AT5G58900 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G58900 T266573_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G58900
M07146_2.00
Arabidopsis thaliana
HHWWYCTTATCYWHW

WDWRGATAAGRWWDD
Dap-seq
OMalley et al.(2016)
At5g58900_col_a
(Direct) (Direct)
AT5G58900
M07147_2.00
Arabidopsis thaliana
HWYMTTATCHWNWWH

DWWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK27213.1
M01284_2.00
Cannabis sativa
NHWATCNNNN

NNNNGATWDN
PBM
Lambert et al.(2019)
pTH10196
0.756 0.849
PK27213.1
M02356_2.00
Cannabis sativa
NHHATCNNNN

NNNNGATDDN
PBM
Weirauch et al.(2014)
pTH9600
0.756 0.849
AT5G05790
M07119_2.00
Arabidopsis thaliana
HWYMTTATCHWNWHH

DDWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g05790_col_a
0.687 0.774
PK27693.1
M01285_2.00
Cannabis sativa
NNYTATCBNN

NNVGATARNN
PBM
Lambert et al.(2019)
pTH11302
0.670 0.817
AT2G38090
M07055_2.00
Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN

NVNRDWNWRGATAARNWTVDD
Dap-seq
OMalley et al.(2016)
At2g38090_col_a
0.661 0.806
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G58900.1 Myb 140 187

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Hivep2 Mus musculus ENSMUSG00000015501 I 0.000
ENSACAG00000008187 Anolis carolinensis ENSACAG00000008187 N 0.000
ENSSTOG00000014879 Ictidomys tridecemlineatus ENSSTOG00000014879 N 0.000
HIVEP3 Taeniopygia guttata ENSTGUG00000017331 N 0.000
ENSTRUG00000010896 Takifugu rubripes ENSTRUG00000010896 N 0.000
ENSTSYG00000014718 Tarsius syrichta ENSTSYG00000014718 N 0.000
ENSXMAG00000015773 Xiphophorus maculatus ENSXMAG00000015773 N 0.000
GJ17675 Drosophila virilis FBgn0204844 N 0.000
NV31766 Nasonia vitripennis NV31766 N 0.000
Alligator_sinensis_CCG009304.1 Alligator sinensis Alligator_sinensis_CCG009304.1 N 0.000
Brh_R000375 Buceros rhinoceros Brh_R000375 N 0.000
Gfo_R008964 Geospiza fortis Gfo_R008964 N 0.000
Tal_R002635 Tyto alba Tal_R002635 N 0.000
LLOJ000479 Lutzomyia longipalpis LLOJ000479 N 0.000
HIVEP2 Sorex araneus ENSSARG00000005468 N 0.000
ENSSARG00000001213 Sorex araneus ENSSARG00000001213 N 0.000
HIVEP3 Choloepus hoffmanni ENSCHOG00000012407 N 0.000
HIVEP3 Callithrix jacchus ENSCJAG00000015848 N 0.000
Hivep3 Dipodomys ordii ENSDORG00000006074 N 0.000
HIVEP3 Erinaceus europaeus ENSEEUG00000014689 N 0.000
HIVEP2 Echinops telfairi ENSETEG00000018336 N 0.000
ENSGMOG00000005293 Gadus morhua ENSGMOG00000005293 N 0.000
ENSGMOG00000006318 Gadus morhua ENSGMOG00000006318 N 0.000
HIVEP3 Ochotona princeps ENSOPRG00000003135 N 0.000
HIVEP1 Procavia capensis ENSPCAG00000007961 N 0.000
HIVEP3 Procavia capensis ENSPCAG00000009633 N 0.000
ENSPFOG00000003107 Poecilia formosa ENSPFOG00000003107 N 0.000
ENSPMAG00000000830 Petromyzon marinus ENSPMAG00000000830 N 0.000
LLOJ003078 Lutzomyia longipalpis LLOJ003078 N 0.000