CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BOA
(
Arabidopsis thaliana
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
AT5G59570
T266575_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock. LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness. It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G05090
M02305_2.00
Arabidopsis thaliana
NHAGATHCKNN
NNMGDATCTDN
PBM
Weirauch et al.(2014)
pTH7104
0.827
0.957
ARR14
M00873_2.00
Arabidopsis thaliana
NNAGATHCKS
SMGDATCTNN
PBM
Franco-Zorrilla et al.(2014)
ARR14
0.662
0.660
ARR14
M02293_2.00
Arabidopsis thaliana
NAGATHYBNN
NNVRDATCTN
PBM
Weirauch et al.(2014)
pTH7531
0.662
0.660
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G59570.1
Myb
143
193
RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYR
AT5G59570.2
Myb
143
193
RLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis thaliana
TFs
305 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy