BGIOSGA002879 (Oryza indica)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 BGIOSGA002879 T266737_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
EFM
M07044_2.00
Arabidopsis thaliana
NNGAATATTCY

RGAATATTCNN
Dap-seq
OMalley et al.(2016)
At2g03500_col_a
0.834 0.915
EFM
M07045_2.00
Arabidopsis thaliana
RGAATCHWAGATTC

GAATCTWDGATTCY
Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a
0.834 0.915
NIGT1
M02328_2.00
Oryza sativa
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH8646
0.828 0.894
HHO3
M02289_2.00
Arabidopsis thaliana
NWGATWCBNN

NNVGWATCWN
PBM
Weirauch et al.(2014)
pTH7278
0.820 0.894
HHO3
M07016_2.00
Arabidopsis thaliana
NNDHNNAAKATTCY

RGAATMTTNNDHNN
Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a
0.820 0.894
HHO3
M07017_2.00
Arabidopsis thaliana
HNNAAKATTCY

RGAATMTTNND
Dap-seq
OMalley et al.(2016)
At1g25550_col
0.820 0.894
HHO2
M02290_2.00
Arabidopsis thaliana
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH7115
0.801 0.894
HHO2
M07029_2.00
Arabidopsis thaliana
AKATTCY

RGAATMT
Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a
0.801 0.894
HHO2
M07030_2.00
Arabidopsis thaliana
RDATYNNAGATTC

GAATCTNNRATHY
Dap-seq
OMalley et al.(2016)
At1g68670_col
0.801 0.894
PK19779.1
M02354_2.00
Cannabis sativa
NNKATNCNNN

NNNGNATMNN
PBM
Weirauch et al.(2014)
pTH9610
0.779 0.894
HHO6
M07024_2.00
Arabidopsis thaliana
GAATCTNNDAT

ATHNNAGATTC
Dap-seq
OMalley et al.(2016)
AT1G49560_col_a
0.776 0.872
HHO6
M07025_2.00
Arabidopsis thaliana
DGAATCTHNGATHCN

NGDATCNDAGATTCH
Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a
0.776 0.872
HRS1
M02284_2.00
Arabidopsis thaliana
AGATTCYN

NRGAATCT
PBM
Weirauch et al.(2014)
pTH7118
0.775 0.872
HRS1
M01068_2.00
Arabidopsis thaliana
NAGATTCBNN

NNVGAATCTN
PBM
Sullivan et al.(2014)
pTH7648
0.775 0.872
HRS1
M07004_2.00
Arabidopsis thaliana
NDDWWVNAAKATTCY

RGAATMTTNBWWHHN
Dap-seq
OMalley et al.(2016)
At1g13300_col_a
0.775 0.872
PK14402.1
M02352_2.00
Cannabis sativa
NDWGATTCSNN

NNSGAATCWHN
PBM
Weirauch et al.(2014)
pTH9491
0.738 0.851
HHO5
M07112_2.00
Arabidopsis thaliana
HNDAAGATTCH

DGAATCTTHND
Dap-seq
OMalley et al.(2016)
AT4G37180_col_a
0.711 0.830
HHO5
M07113_2.00
Arabidopsis thaliana
NNDAAGATTCY

RGAATCTTHNN
Dap-seq
OMalley et al.(2016)
AT4G37180_colamp_a
0.711 0.830
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA002879-PA Myb 194 245

Links

Other Myb/SANT family TFs
Other Oryza indica TFs

367 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ILI5 Oryza indica BGIOSGA005623 N 0.000
OPUNC02G30020 Oryza punctata OPUNC02G30020 N 0.000
OPUNC06G07810 Oryza punctata OPUNC06G07810 N 0.000
ORGLA02G0280200 Oryza glaberrima ORGLA02G0280200 N 0.000
ORGLA06G0076300 Oryza glaberrima ORGLA06G0076300 N 0.000
ORUFI02G34170 Oryza rufipogon ORUFI02G34170 N 0.000
ILI5 Oryza sativa OS02G0747900 N 0.000
ILI4 Oryza sativa OS06G0226500 N 0.000
Sb10g008000 Sorghum bicolor Sb10g008000 N 0.000
Si007662m.g Setaria italica Si007662m.g N 0.000
Traes_6DL_3F9FA4887 Triticum aestivum Traes_6DL_3F9FA4887 N 0.000
TRIUR3_29197 Triticum urartu TRIUR3_29197 N 0.000
Pavir.Ab02945 Panicum virgatum Pavir.Ab02945 N 0.000
Pavir.Db01746 Panicum virgatum Pavir.Db01746 N 0.000
Pavir.J09493 Panicum virgatum Pavir.J09493 N 0.000
ONIVA06G09300 Oryza nivara ONIVA06G09300 N 0.000
ONIVA06G04530 Oryza nivara ONIVA06G04530 N 0.000
ILI4 Oryza indica BGIOSGA022576 N 0.000
BRADI1G45260 Brachypodium distachyon BRADI1G45260 N 0.000
BRADI3G59290 Brachypodium distachyon BRADI3G59290 N 0.000
F775_27240 Aegilops tauschii F775_27240 N 0.000
GRMZM2G036092 Zea mays GRMZM2G036092 N 0.000
LPERR02G26590 Leersia perrieri LPERR02G26590 N 0.000
LPERR06G07460 Leersia perrieri LPERR06G07460 N 0.000
OB02G39450 Oryza brachyantha OB02G39450 N 0.000
OB06G17570 Oryza brachyantha OB06G17570 N 0.000
OBART02G32470 Oryza barthii OBART02G32470 N 0.000
OGLUM02G33100 Oryza glumaepatula OGLUM02G33100 N 0.000
OLONG_003198 Oryza longistaminata OLONG_003198 N 0.000
OMERI02G31120 Oryza meridionalis OMERI02G31120 N 0.000
OMERI06G09660 Oryza meridionalis OMERI06G09660 N 0.000
Pavir.J39793 Panicum virgatum Pavir.J39793 N 0.000