BGIOSGA017461 (Oryza indica)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 BGIOSGA017461 T266848_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
fgenesh1_pg.scaffold_70000111
M02342_2.00
Physcomitrella patens
NNHNATCBN

NVGATNDNN
PBM
Weirauch et al.(2014)
pTH8492
0.884 0.872
PK17526.1
M02353_2.00
Cannabis sativa
NNTTATCCAN

NTGGATAANN
PBM
Weirauch et al.(2014)
pTH9588
0.866 0.809
AT3G16350
M01078_2.00
Arabidopsis thaliana
NYTATCYDNN

NNHRGATARN
PBM
Sullivan et al.(2014)
pTH7149
0.863 0.830
PK23829.1
M02355_2.00
Cannabis sativa
VTTATCCD

HGGATAAB
PBM
Weirauch et al.(2014)
pTH9592
0.854 0.809
PK29550.1
M02358_2.00
Cannabis sativa
NNHDATCYNN

NNRGATHDNN
PBM
Weirauch et al.(2014)
pTH9595
0.853 0.809
AT5G61620
M07149_2.00
Arabidopsis thaliana
WWHHTTATCCAHWWN

NWWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
AT5G61620_col_a
0.835 0.809
AT5G61620
M07150_2.00
Arabidopsis thaliana
YHTTATCCAHW

WDTGGATAADR
Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a
0.835 0.809
KUA1
M02312_2.00
Arabidopsis thaliana
NNTTATCCDN

NHGGATAANN
PBM
Weirauch et al.(2014)
pTH7647
0.825 0.809
KUA1
M07136_2.00
Arabidopsis thaliana
WWHHTTATCCAHWW

WWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a
0.825 0.809
KUA1
M07137_2.00
Arabidopsis thaliana
HHWDYHTTATCCAHW

WDTGGATAADRHWDD
Dap-seq
OMalley et al.(2016)
At5g47390_col_b
0.825 0.809
PK00738.1
M02346_2.00
Cannabis sativa
NYWATCYDNN

NNHRGATWRN
PBM
Weirauch et al.(2014)
pTH9487
0.804 0.787
AT1G19000
M02287_2.00
Arabidopsis thaliana
NYTATCYDNN

NNHRGATARN
PBM
Weirauch et al.(2014)
pTH7120
0.792 0.766
AT1G19000
M07012_2.00
Arabidopsis thaliana
HDYHTTATCCAHWW

WWDTGGATAADRHD
Dap-seq
OMalley et al.(2016)
At1g19000_col_a
0.792 0.766
AT1G19000
M07013_2.00
Arabidopsis thaliana
WDYNTTATCCAHWW

WWDTGGATAANRHW
Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a
0.792 0.766
0600010132
M02360_2.00
Ostreococcus tauri
NNVTTATCCDNNN

NNNHGGATAABNN
PBM
Weirauch et al.(2014)
pTH9441
0.786 0.809
AT5G56840
M07144_2.00
Arabidopsis thaliana
WWYMTTATCCAWWWN

NWWWTGGATAAKRWW
Dap-seq
OMalley et al.(2016)
AT5G56840_col_a
0.774 0.809
AT5G56840
M07145_2.00
Arabidopsis thaliana
HHHWWYHTTATCCWHW

WDWGGATAADRWWDDD
Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a
0.774 0.809
AT3G10580
M07072_2.00
Arabidopsis thaliana
AWBCTTATCYWHWHH

DDWDWRGATAAGVWT
Dap-seq
OMalley et al.(2016)
AT3G10580_col_a
0.751 0.681
AT3G10580
M07073_2.00
Arabidopsis thaliana
CCGAWAAWNTCGGDD

HHCCGANWTTWTCGG
Dap-seq
OMalley et al.(2016)
AT3G10580_colamp_a
0.751 0.681
AT1G74840
M02291_2.00
Arabidopsis thaliana
NGWTATCCRNN

NNYGGATAWCN
PBM
Weirauch et al.(2014)
pTH7074
0.746 0.766
AT1G74840
M07037_2.00
Arabidopsis thaliana
HHTTATCCAHW

WDTGGATAADD
Dap-seq
OMalley et al.(2016)
At1g74840_col100_a
0.746 0.766
AT1G74840
M07038_2.00
Arabidopsis thaliana
HWNHTTATCCAHWW

WWDTGGATAADNWD
Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a
0.746 0.766
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA017461-PA Myb 110 157

Links

Other Myb/SANT family TFs
Other Oryza indica TFs

598 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action