Bo09513s010 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo09513s010 T267052_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HHO3
M02289_2.00
Arabidopsis thaliana
NWGATWCBNN

NNVGWATCWN
PBM
Weirauch et al.(2014)
pTH7278
0.699 0.795
HHO2
M02290_2.00
Arabidopsis thaliana
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH7115
0.699 0.795
HHO3
M07016_2.00
Arabidopsis thaliana
NNDHNNAAKATTCY

RGAATMTTNNDHNN
Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a
0.699 0.795
HHO3
M07017_2.00
Arabidopsis thaliana
HNNAAKATTCY

RGAATMTTNND
Dap-seq
OMalley et al.(2016)
At1g25550_col
0.699 0.795
HHO2
M07029_2.00
Arabidopsis thaliana
AKATTCY

RGAATMT
Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a
0.699 0.795
HHO2
M07030_2.00
Arabidopsis thaliana
RDATYNNAGATTC

GAATCTNNRATHY
Dap-seq
OMalley et al.(2016)
At1g68670_col
0.699 0.795
EFM
M07044_2.00
Arabidopsis thaliana
NNGAATATTCY

RGAATATTCNN
Dap-seq
OMalley et al.(2016)
At2g03500_col_a
0.697 0.795
EFM
M07045_2.00
Arabidopsis thaliana
RGAATCHWAGATTC

GAATCTWDGATTCY
Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a
0.697 0.795
NIGT1
M02328_2.00
Oryza sativa
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH8646
0.691 0.750
HRS1
M02284_2.00
Arabidopsis thaliana
AGATTCYN

NRGAATCT
PBM
Weirauch et al.(2014)
pTH7118
0.675 0.750
HRS1
M01068_2.00
Arabidopsis thaliana
NAGATTCBNN

NNVGAATCTN
PBM
Sullivan et al.(2014)
pTH7648
0.675 0.750
HRS1
M07004_2.00
Arabidopsis thaliana
NDDWWVNAAKATTCY

RGAATMTTNBWWHHN
Dap-seq
OMalley et al.(2016)
At1g13300_col_a
0.675 0.750
PK19779.1
M02354_2.00
Cannabis sativa
NNKATNCNNN

NNNGNATMNN
PBM
Weirauch et al.(2014)
pTH9610
0.673 0.750
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo09513s010.1 Myb 60 108

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo4g053920 Brassica oleracea Bo4g053920 I 0.828
Bo7g118260 Brassica oleracea Bo7g118260 I 0.827
Bra017795 Brassica rapa Bra017795 I 0.780
GSMUA_Achr10G28540_001 Musa acuminata GSMUA_Achr10G28540_001 I 0.735
Lus10019452.g Linum usitatissimum Lus10019452.g I 0.724
MDP0000231315 Malus domestica MDP0000231315 I 0.724
Bra012471 Brassica rapa Bra012471 I 0.719
TCM_011857 Theobroma cacao TCM_011857 I 0.718
TRIUR3_20779 Triticum urartu TRIUR3_20779 I 0.718
MTR_4g086835 Medicago truncatula MTR_4g086835 I 0.717
GLYMA02G15320 Glycine max GLYMA02G15320 I 0.717
evm.TU.supercontig_6.397 Carica papaya evm.TU.supercontig_6.397 I 0.717
GLYMA07G33130 Glycine max GLYMA07G33130 I 0.717
Ca_06422 Cicer arietinum Ca_06422 I 0.717
cassava11986.valid.m1 Manihot esculenta cassava11986.valid.m1 I 0.709
SELMODRAFT_66160 Selaginella moellendorffii SELMODRAFT_66160 I 0.709
OLONG_023667 Oryza longistaminata OLONG_023667 I 0.709
Bra010581 Brassica rapa Bra010581 I 0.705
Bo3g153770 Brassica oleracea Bo3g153770 I 0.705
HHO1 Arabidopsis thaliana AT3G25790 I 0.701
Carubv10004940m.g Capsella rubella Carubv10004940m.g I 0.701
Cagra.4909s0021 Capsella grandiflora Cagra.4909s0021 I 0.701
Cagra.0613s0015 Capsella grandiflora Cagra.0613s0015 I 0.699
Bra038360 Brassica rapa Bra038360 I 0.699
Carubv10020552m.g Capsella rubella Carubv10020552m.g I 0.699
Bostr.26959s0022 Boechera stricta Bostr.26959s0022 I 0.699
fgenesh2_kg.2__1124__AT1G68670.1 Arabidopsis lyrata fgenesh2_kg.2__1124__AT1G68670.1 I 0.699
Cagra.3392s0001 Capsella grandiflora Cagra.3392s0001 I 0.699
Bostr.12659s0399 Boechera stricta Bostr.12659s0399 I 0.699
Carubv10009492m.g Capsella rubella Carubv10009492m.g I 0.699
HHO2 Arabidopsis thaliana AT1G68670 D 0.699
Bo6g107160 Brassica oleracea Bo6g107160 I 0.699
Bo2g061130 Brassica oleracea Bo2g061130 I 0.699
Thhalv10008115m.g Eutrema salsugineum Thhalv10008115m.g I 0.699
HHO3 Arabidopsis thaliana AT1G25550 D 0.699
Bra004330 Brassica rapa Bra004330 I 0.699
Thhalv10018737m.g Eutrema salsugineum Thhalv10018737m.g I 0.699
Al_scaffold_0001_2706 Arabidopsis lyrata Al_scaffold_0001_2706 I 0.699
Gorai.003G021300 Gossypium raimondii Gorai.003G021300 I 0.699
POPTR_0006s16000 Populus trichocarpa POPTR_0006s16000 I 0.697
Cla012503 Citrullus lanatus Cla012503 I 0.697
Ca_06627 Cicer arietinum Ca_06627 I 0.697
Cla017007 Citrullus lanatus Cla017007 I 0.697
cassava11434.m1 Manihot esculenta cassava11434.m1 I 0.697
Pm027466 Prunus mume Pm027466 I 0.697
Thhalv10004257m.g Eutrema salsugineum Thhalv10004257m.g I 0.697
29807.m000474 Ricinus communis 29807.m000474 I 0.697
POPTR_0018s06410 Populus trichocarpa POPTR_0018s06410 I 0.697
PK20621.1 Cannabis sativa PK20621.1 I 0.697
SELMODRAFT_402040 Selaginella moellendorffii SELMODRAFT_402040 I 0.697
Solyc12g006800.1 Solanum lycopersicum Solyc12g006800.1 I 0.697
TCM_037970 Theobroma cacao TCM_037970 I 0.697
SELMODRAFT_423260 Selaginella moellendorffii SELMODRAFT_423260 I 0.697
PRUPE_ppa016044mg Prunus persica PRUPE_ppa016044mg I 0.697
VIT_11s0016g04600 Vitis vinifera VIT_11s0016g04600 I 0.697
Cucsa.116140 Cucumis sativus Cucsa.116140 I 0.697
PGSC0003DMG400030389 Solanum tuberosum PGSC0003DMG400030389 I 0.697
Gorai.009G022100 Gossypium raimondii Gorai.009G022100 I 0.697
Lus10043304.g Linum usitatissimum Lus10043304.g I 0.697
Cagra.3545s0007 Capsella grandiflora Cagra.3545s0007 I 0.697
Carubv10017308m.g Capsella rubella Carubv10017308m.g I 0.697
Ciclev10008096m.g Citrus clementina Ciclev10008096m.g I 0.697
Gorai.001G002800 Gossypium raimondii Gorai.001G002800 I 0.697
evm.TU.supercontig_127.55 Carica papaya evm.TU.supercontig_127.55 I 0.697
Eucgr.C04155 Eucalyptus grandis Eucgr.C04155 I 0.697
MDP0000128135 Malus domestica MDP0000128135 I 0.697
orange1.1g011048m.g Citrus sinensis orange1.1g011048m.g I 0.697
fgenesh1_pg.scaffold_166000054 Physcomitrella patens fgenesh1_pg.scaffold_166000054 I 0.697
gene30953-v1.0-hybrid Fragaria vesca gene30953-v1.0-hybrid I 0.697
Cucsa.082250 Cucumis sativus Cucsa.082250 I 0.697
Aquca_001_00694 Aquilegia coerulea Aquca_001_00694 I 0.697
Bostr.0556s0172 Boechera stricta Bostr.0556s0172 I 0.697
SapurV1A.0246s0200 Salix purpurea SapurV1A.0246s0200 I 0.697
SapurV1A.0512s0010 Salix purpurea SapurV1A.0512s0010 I 0.697
SapurV1A.1984s0010 Salix purpurea SapurV1A.1984s0010 I 0.697
cassava24190.valid.m1 Manihot esculenta cassava24190.valid.m1 I 0.697
scaffold_500333.1 Arabidopsis lyrata scaffold_500333.1 I 0.697
GLYMA17G12720 Glycine max GLYMA17G12720 I 0.697
GLYMA06G23902 Glycine max GLYMA06G23902 I 0.697
GSMUA_Achr10G27180_001 Musa acuminata GSMUA_Achr10G27180_001 I 0.697
AMTR_s00122p00127250 Amborella trichopoda AMTR_s00122p00127250 I 0.697
MTR_4g113140 Medicago truncatula MTR_4g113140 I 0.697
GLYMA05G08150 Glycine max GLYMA05G08150 I 0.697
GLYMA04G21680 Glycine max GLYMA04G21680 I 0.697
Bo2g137000 Brassica oleracea Bo2g137000 I 0.697
EFM Arabidopsis thaliana AT2G03500 D 0.697
Bo7g081380 Brassica oleracea Bo7g081380 I 0.697
Bra025115 Brassica rapa Bra025115 I 0.697
Bra026548 Brassica rapa Bra026548 I 0.697
AMTR_s00033p00241280 Amborella trichopoda AMTR_s00033p00241280 I 0.697
GSMUA_Achr6G05330_001 Musa acuminata GSMUA_Achr6G05330_001 I 0.697
SapurV1A.1001s0050 Salix purpurea SapurV1A.1001s0050 I 0.691
GSMUA_Achr8G18270_001 Musa acuminata GSMUA_Achr8G18270_001 I 0.691
Cucsa.365440 Cucumis sativus Cucsa.365440 I 0.691
NIGT1 Oryza sativa OS02G0325600 D 0.691
Aquca_010_00298 Aquilegia coerulea Aquca_010_00298 I 0.691
LPERR02G11880 Leersia perrieri LPERR02G11880 I 0.691
28883.m000751 Ricinus communis 28883.m000751 I 0.691
OB02G22950 Oryza brachyantha OB02G22950 I 0.691
VIT_01s0011g03110 Vitis vinifera VIT_01s0011g03110 I 0.691
Cla008104 Citrullus lanatus Cla008104 I 0.691
MLOC_72007 Hordeum vulgare MLOC_72007 I 0.691
Pm029019 Prunus mume Pm029019 I 0.691
PGSC0003DMG400000828 Solanum tuberosum PGSC0003DMG400000828 I 0.691
ORUFI02G14900 Oryza rufipogon ORUFI02G14900 I 0.691
OPUNC02G13150 Oryza punctata OPUNC02G13150 I 0.691
MDP0000202657 Malus domestica MDP0000202657 I 0.691
MDP0000703817 Malus domestica MDP0000703817 I 0.691
Pavir.Aa02952 Panicum virgatum Pavir.Aa02952 I 0.691
Pavir.Ab00626 Panicum virgatum Pavir.Ab00626 I 0.691
Lus10035043.g Linum usitatissimum Lus10035043.g I 0.691
Lus10021699.g Linum usitatissimum Lus10021699.g I 0.691
BRADI3G10730 Brachypodium distachyon BRADI3G10730 I 0.691
F775_13221 Aegilops tauschii F775_13221 I 0.691
evm.TU.supercontig_1.213 Carica papaya evm.TU.supercontig_1.213 I 0.691
ORGLA02G0127400 Oryza glaberrima ORGLA02G0127400 I 0.691
Gorai.008G185500 Gossypium raimondii Gorai.008G185500 I 0.691
OBART02G14690 Oryza barthii OBART02G14690 I 0.691
Aquca_026_00236 Aquilegia coerulea Aquca_026_00236 I 0.691
Solyc05g009720.2 Solanum lycopersicum Solyc05g009720.2 I 0.691
OGLUM02G14610 Oryza glumaepatula OGLUM02G14610 I 0.691
Sb08g003180 Sorghum bicolor Sb08g003180 I 0.691
ONIVA02G15910 Oryza nivara ONIVA02G15910 I 0.691
OLONG_018167 Oryza longistaminata OLONG_018167 I 0.691
POPTR_0008s11630 Populus trichocarpa POPTR_0008s11630 I 0.691
AMTR_s00093p00110710 Amborella trichopoda AMTR_s00093p00110710 I 0.691
Traes_2BS_10A8CAB27 Triticum aestivum Traes_2BS_10A8CAB27 I 0.691
OMERI02G14870 Oryza meridionalis OMERI02G14870 I 0.691
PRUPE_ppa007222mg Prunus persica PRUPE_ppa007222mg I 0.691
GSMUA_Achr9G26570_001 Musa acuminata GSMUA_Achr9G26570_001 I 0.689
Lus10034280.g Linum usitatissimum Lus10034280.g I 0.688
Ciclev10028556m.g Citrus clementina Ciclev10028556m.g I 0.685
orange1.1g015403m.g Citrus sinensis orange1.1g015403m.g I 0.685
Eucgr.G01503 Eucalyptus grandis Eucgr.G01503 I 0.685
Lus10041485.g Linum usitatissimum Lus10041485.g I 0.683
F775_15336 Aegilops tauschii F775_15336 I 0.681
Traes_5DS_13C2391DC Triticum aestivum Traes_5DS_13C2391DC I 0.681
AC234520.1_FG003 Zea mays AC234520.1_FG003 I 0.681
ORGLA12G0148200 Oryza glaberrima ORGLA12G0148200 I 0.681
Sb03g004090 Sorghum bicolor Sb03g004090 I 0.681
OMERI01G04960 Oryza meridionalis OMERI01G04960 I 0.681
ORUFI01G05240 Oryza rufipogon ORUFI01G05240 I 0.681
ONIVA01G05610 Oryza nivara ONIVA01G05610 I 0.681
F775_03006 Aegilops tauschii F775_03006 I 0.681
Sb08g019720 Sorghum bicolor Sb08g019720 I 0.681
BRADI2G04810 Brachypodium distachyon BRADI2G04810 I 0.681
ORGLA01G0045900 Oryza glaberrima ORGLA01G0045900 I 0.681
OPUNC12G15670 Oryza punctata OPUNC12G15670 I 0.681
BRADI4G03160 Brachypodium distachyon BRADI4G03160 I 0.681
BGIOSGA037689 Oryza indica BGIOSGA037689 I 0.681
Pavir.Ca02525 Panicum virgatum Pavir.Ca02525 I 0.681
OS01G0176700 Oryza sativa OS01G0176700 I 0.681
OGLUM01G05410 Oryza glumaepatula OGLUM01G05410 I 0.681
LPERR12G14470 Leersia perrieri LPERR12G14470 I 0.681
LPERR01G04660 Leersia perrieri LPERR01G04660 I 0.681
GSMUA_Achr6G34680_001 Musa acuminata GSMUA_Achr6G34680_001 I 0.681
Si022287m.g Setaria italica Si022287m.g I 0.681
Cla020676 Citrullus lanatus Cla020676 I 0.681
OBART12G17240 Oryza barthii OBART12G17240 I 0.681
TRAES3BF056900070CFD_g Triticum aestivum TRAES3BF056900070CFD_g I 0.681
Traes_5BS_C9EA93E10 Triticum aestivum Traes_5BS_C9EA93E10 I 0.681
OB01G14760 Oryza brachyantha OB01G14760 I 0.681
BGIOSGA002879 Oryza indica BGIOSGA002879 I 0.681
OS12G0586300 Oryza sativa OS12G0586300 I 0.681
ORUFI12G19230 Oryza rufipogon ORUFI12G19230 I 0.681
Cucsa.283860 Cucumis sativus Cucsa.283860 I 0.681
GRMZM2G348238 Zea mays GRMZM2G348238 I 0.681
OPUNC01G04800 Oryza punctata OPUNC01G04800 I 0.681
Pavir.Eb00363 Panicum virgatum Pavir.Eb00363 I 0.681
Pavir.J13382 Panicum virgatum Pavir.J13382 I 0.681
OLONG_018015 Oryza longistaminata OLONG_018015 I 0.681
OGLUM12G18880 Oryza glumaepatula OGLUM12G18880 I 0.681
Si001230m.g Setaria italica Si001230m.g I 0.681
mgf007637m Mimulus guttatus mgf007637m I 0.681
ONIVA12G16020 Oryza nivara ONIVA12G16020 I 0.681
Pavir.J08752 Panicum virgatum Pavir.J08752 I 0.681
GSMUA_Achr3G21090_001 Musa acuminata GSMUA_Achr3G21090_001 I 0.678
Si019945m.g Setaria italica Si019945m.g I 0.677
Bo5g015170 Brassica oleracea Bo5g015170 I 0.675
Carubv10011925m.g Capsella rubella Carubv10011925m.g I 0.675
Carubv10018983m.g Capsella rubella Carubv10018983m.g I 0.675
Lus10020995.g Linum usitatissimum Lus10020995.g I 0.675
Cagra.3501s0169 Capsella grandiflora Cagra.3501s0169 I 0.675
Cagra.0167s0004 Capsella grandiflora Cagra.0167s0004 I 0.675
Bostr.0556s0249 Boechera stricta Bostr.0556s0249 I 0.675
Bostr.13671s0116 Boechera stricta Bostr.13671s0116 I 0.675
Bra019824 Brassica rapa Bra019824 I 0.675
HRS1 Arabidopsis lyrata scaffold_101490.1 I 0.675
Thhalv10008054m.g Eutrema salsugineum Thhalv10008054m.g I 0.675
HRS1 Arabidopsis thaliana AT1G13300 D 0.675
Bo7g082060 Brassica oleracea Bo7g082060 I 0.675
Thhalv10004475m.g Eutrema salsugineum Thhalv10004475m.g I 0.675
Lus10012056.g Linum usitatissimum Lus10012056.g I 0.675
MTR_5g054300 Medicago truncatula MTR_5g054300 I 0.673
Gorai.013G080200 Gossypium raimondii Gorai.013G080200 I 0.673
PK19779.1 Cannabis sativa PK19779.1 D 0.673
GSMUA_Achr11G13410_001 Musa acuminata GSMUA_Achr11G13410_001 I 0.673
GSMUA_Achr4G03680_001 Musa acuminata GSMUA_Achr4G03680_001 I 0.670
Solyc02g090400.2 Solanum lycopersicum Solyc02g090400.2 I 0.668
PGSC0003DMG400010067 Solanum tuberosum PGSC0003DMG400010067 I 0.668
PGSC0003DMG400025801 Solanum tuberosum PGSC0003DMG400025801 I 0.665
Bra016734 Brassica rapa Bra016734 I 0.665
Bo8g065380 Brassica oleracea Bo8g065380 I 0.665
Pavir.J16844 Panicum virgatum Pavir.J16844 I 0.663
Gorai.010G067300 Gossypium raimondii Gorai.010G067300 I 0.662
GSMUA_Achr4G23210_001 Musa acuminata GSMUA_Achr4G23210_001 I 0.662
HHO5 Arabidopsis thaliana AT4G37180 D 0.661