CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo1g082480
(
Brassica oleracea
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bo1g082480
T267086_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
F3A4.140
M02299_2.00
Arabidopsis thaliana
YAACBGYY
RRCVGTTR
PBM
Weirauch et al.(2014)
pTH7112
0.811
0.903
F3A4.140
M07095_2.00
Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA
Dap-seq
OMalley et al.(2016)
MYB77_col_a
0.811
0.903
F3A4.140
M07096_2.00
Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT
Dap-seq
OMalley et al.(2016)
MYB77_colamp_a
0.811
0.903
F3A4.140
M02701_2.00
Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS
SELEX
Mathelier et al.(2014)
MA0575.1
0.811
0.903
F3A4.140
M11044_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB77_01
0.811
0.903
MYB44
M01082_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH7078
0.759
0.849
MYB44
M07155_2.00
Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD
Dap-seq
OMalley et al.(2016)
MYB44_colamp_a
0.759
0.849
MYB44
M07156_2.00
Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD
Dap-seq
OMalley et al.(2016)
MYB44_col
0.759
0.849
PK28565.1
M02357_2.00
Cannabis sativa
TAACBGTY
RACVGTTA
PBM
Weirauch et al.(2014)
pTH9653
0.697
0.774
AtMYB70
M01071_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH8588
0.697
0.763
AtMYB70
M07048_2.00
Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR
Dap-seq
OMalley et al.(2016)
MYB70_col_a
0.697
0.763
MYB73
M07114_2.00
Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA
Dap-seq
OMalley et al.(2016)
MYB73_col_a
0.692
0.774
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo1g082480.1
Myb
46
92
KGPWSQEEDEQLRRMVEHYGPRNWLEVSKSVPGRSGKSCRLRWCNQL
Bo1g082480.1
Myb
98
143
HRPFSSEEDKTIVSARATFGNKWATIARLLNGRTDNAVKNHWNSTL
Links
Other
Myb/SANT
family TFs
Other
Brassica oleracea
TFs
138 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy