Bo4g178040 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo4g178040 T267339_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB101
M07051_2.00
Arabidopsis thaliana
NWHHNWAACCGWWHH

DDWWCGGTTWNDDWN
Dap-seq
OMalley et al.(2016)
MYB101_col_a
0.888 0.957
MYB101
M07052_2.00
Arabidopsis thaliana
DHHHVTAACYGWHWN

NWDWCRGTTABDDDH
Dap-seq
OMalley et al.(2016)
MYB101_colamp_a
0.888 0.957
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC

GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.806 0.793
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM

KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.806 0.793
Q9FR42_TOBAC
M11076_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBAS1_01
0.805 0.848
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW

WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.804 0.837
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW

WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.804 0.837
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH

DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.804 0.837
GAM1_ORYSI
M11055_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.788 0.783
MYB33
M02306_2.00
Arabidopsis thaliana
HAACNRHHNN

NNDDYNGTTD
PBM
Weirauch et al.(2014)
pTH8204
0.740 0.750
MYB33
M07120_2.00
Arabidopsis thaliana
NTAACYGWHWH

DWDWCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB33_col_a
0.740 0.750
ATMYB65
M01076_2.00
Arabidopsis thaliana
HAACNRHHN

NDDYNGTTD
PBM
Sullivan et al.(2014)
pTH7084
0.726 0.761
ATMYB65
M07076_2.00
Arabidopsis thaliana
DHHNTAACBGHMW

WKDCVGTTANDDH
Dap-seq
OMalley et al.(2016)
MYB65_col200_a
0.726 0.761
ATMYB65
M07077_2.00
Arabidopsis thaliana
NTAACYGHMWHNDHN

NDHNDWKDCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB65_colamp_a
0.726 0.761
AtMYB81
M07049_2.00
Arabidopsis thaliana
VTAACNGHWWH

DWWDCNGTTAB
Dap-seq
OMalley et al.(2016)
MYB81_col_a
0.663 0.750
AtMYB81
M07050_2.00
Arabidopsis thaliana
DHHNYAACBGHWWH

DWWDCVGTTRNDDH
Dap-seq
OMalley et al.(2016)
MYB81_colamp_a
0.663 0.750
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g178040.1 Myb 15 62
Bo4g178040.1 Myb 68 112

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MYB101 Arabidopsis thaliana AT2G32460 D 0.888
Bo3g026690 Brassica oleracea Bo3g026690 I 0.888
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I 0.888
Bra021791 Brassica rapa Bra021791 I 0.888
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I 0.888
Bra022888 Brassica rapa Bra022888 I 0.873
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I 0.871
Carubv10025227m.g Capsella rubella Carubv10025227m.g I 0.871
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I 0.871
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I 0.858
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I 0.858
29823.m000215 Ricinus communis 29823.m000215 I 0.851
TCM_011907 Theobroma cacao TCM_011907 I 0.849
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I 0.848
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I 0.848
MTR_2g088170 Medicago truncatula MTR_2g088170 I 0.839
MDP0000175835 Malus domestica MDP0000175835 I 0.838
MYB101 Populus trichocarpa POPTR_0002s21300 I 0.838
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.832
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.830
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.830
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.830
Pm015094 Prunus mume Pm015094 I 0.830
MDP0000176798 Malus domestica MDP0000176798 I 0.829
MDP0000151688 Malus domestica MDP0000151688 I 0.829
Bo4g046000 Brassica oleracea Bo4g046000 I 0.828
Bra005597 Brassica rapa Bra005597 I 0.828
cassava11031.m1 Manihot esculenta cassava11031.m1 I 0.827
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I 0.827
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.822
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.822
Ca_07119 Cicer arietinum Ca_07119 I 0.820
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I 0.820
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I 0.815
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.815
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.813
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I 0.813
MDP0000179306 Malus domestica MDP0000179306 I 0.813
TCM_041010 Theobroma cacao TCM_041010 I 0.810
Cla007782 Citrullus lanatus Cla007782 I 0.809
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.809
mgf002965m Mimulus guttatus mgf002965m I 0.807
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.807
Gam1 Hordeum vulgare Q96464_HORVU D 0.806
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.806
Si000907m.g Setaria italica Si000907m.g I 0.806
Ca_25013 Cicer arietinum Ca_25013 I 0.806
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.806
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.806
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.806
F775_28392 Aegilops tauschii F775_28392 I 0.806
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.806
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D 0.805
myb.Ph3 Petunia x hybrida Q02994_PETHY D 0.804
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.802
Cla005406 Citrullus lanatus Cla005406 I 0.802
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.801
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.801
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.801
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.800
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.800
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.798
Pm016605 Prunus mume Pm016605 I 0.798
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.797
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.797
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.797
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.797
MTR_3g052450 Medicago truncatula MTR_3g052450 I 0.797
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.797
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.797
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I 0.796
GLYMA12G31950 Glycine max GLYMA12G31950 I 0.796
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.795
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.794
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.791
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.791
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.791
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.791
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.790
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.790
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.790
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.788
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.788
GAMYB Oryza sativa OS01G0812000 I 0.788
MDP0000308617 Malus domestica MDP0000308617 I 0.788
GAM1 Oryza indica BGIOSGA004670 I 0.788
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.788
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.788
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.788
OBART01G34660 Oryza barthii OBART01G34660 I 0.788
OB01G43550 Oryza brachyantha OB01G43550 I 0.788
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.788
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I 0.787
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.785
mgf025568m Mimulus guttatus mgf025568m I 0.784
29785.m000932 Ricinus communis 29785.m000932 I 0.784
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.784
TCM_044611 Theobroma cacao TCM_044611 I 0.784
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.784
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.784
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.784
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.784
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.784
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.784
29686.m000890 Ricinus communis 29686.m000890 I 0.784
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.784
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.784
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.784
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.781
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.780
Sb03g037680 Sorghum bicolor Sb03g037680 I 0.779
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.779
Ca_20081 Cicer arietinum Ca_20081 I 0.778
Lus10027189.g Linum usitatissimum Lus10027189.g I 0.777
Lus10035275.g Linum usitatissimum Lus10035275.g I 0.777
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I 0.777
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.775
GLYMA08G42920 Glycine max GLYMA08G42920 I 0.775
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.773
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.773
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.773
MTR_3g052430 Medicago truncatula MTR_3g052430 I 0.773
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.772
TCM_030853 Theobroma cacao TCM_030853 I 0.771
Gorai.002G089900 Gossypium raimondii Gorai.002G089900 I 0.771
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.771
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.771
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.770
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.770
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.770
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.769
GLYMA08G42955 Glycine max GLYMA08G42955 I 0.768
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.768
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.767
Ca_21739 Cicer arietinum Ca_21739 I 0.764
mgf010934m Mimulus guttatus mgf010934m I 0.762
mgf019173m Mimulus guttatus mgf019173m I 0.762
LPERR05G16930 Leersia perrieri LPERR05G16930 I 0.762
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I 0.760
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I 0.760
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I 0.760
Carubv10000715m.g Capsella rubella Carubv10000715m.g I 0.760
MTR_3g011610 Medicago truncatula MTR_3g011610 I 0.759
MDP0000147309 Malus domestica MDP0000147309 I 0.759
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.756
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.755
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.755
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.754
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I 0.754
SELMODRAFT_38120 Selaginella moellendorffii SELMODRAFT_38120 I 0.748
LjSGA_010688.1 Lotus japonicus LjSGA_010688.1 I 0.746
Cla013880 Citrullus lanatus Cla013880 I 0.745
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.743
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I 0.742
MTR_1g021230 Medicago truncatula MTR_1g021230 I 0.742
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I 0.741
Pm011812 Prunus mume Pm011812 I 0.740
Gorai.007G312400 Gossypium raimondii Gorai.007G312400 I 0.740
MYB33 Arabidopsis thaliana AT5G06100 D 0.740
GLYMA13G04031 Glycine max GLYMA13G04031 I 0.737
Bra002938 Brassica rapa Bra002938 I 0.734
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.734
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.734
Bo9g119060 Brassica oleracea Bo9g119060 I 0.734
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.734
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.734
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.734
TRIUR3_17275 Triticum urartu TRIUR3_17275 I 0.733
Traes_1BL_CF98E922B Triticum aestivum Traes_1BL_CF98E922B I 0.733
BGIOSGA017818 Oryza indica BGIOSGA017818 I 0.732
ORUFI05G22370 Oryza rufipogon ORUFI05G22370 I 0.732
OGLUM05G22330 Oryza glumaepatula OGLUM05G22330 I 0.732
PK17293.1 Cannabis sativa PK17293.1 I 0.732
OS05G0490600 Oryza sativa OS05G0490600 I 0.732
OBART05G21120 Oryza barthii OBART05G21120 I 0.732
OPUNC05G18800 Oryza punctata OPUNC05G18800 I 0.732
mgf020500m Mimulus guttatus mgf020500m I 0.730
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I 0.728
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I 0.727
Bo5g136570 Brassica oleracea Bo5g136570 I 0.726
Carubv10013393m.g Capsella rubella Carubv10013393m.g I 0.726
ATMYB65 Arabidopsis thaliana AT3G11440 D 0.726
ATMYB65 Arabidopsis lyrata fgenesh2_kg.3__1182__AT3G11440.1 I 0.726
Cagra.1655s0026 Capsella grandiflora Cagra.1655s0026 I 0.726
Bra034842 Brassica rapa Bra034842 I 0.726
Thhalv10020455m.g Eutrema salsugineum Thhalv10020455m.g I 0.726
Bostr.19424s1075 Boechera stricta Bostr.19424s1075 I 0.726
GRMZM2G028054 Zea mays GRMZM2G028054 I 0.725
GLYMA20G11040 Glycine max GLYMA20G11040 I 0.721
Bra035547 Brassica rapa Bra035547 I 0.721
GLYMA04G15150 Glycine max GLYMA04G15150 I 0.718
Ca_15422 Cicer arietinum Ca_15422 I 0.717
OLONG_025057 Oryza longistaminata OLONG_025057 I 0.715
ONIVA04G15310 Oryza nivara ONIVA04G15310 I 0.715
OGLUM03G24880 Oryza glumaepatula OGLUM03G24880 I 0.715
ORUFI03G24730 Oryza rufipogon ORUFI03G24730 I 0.715
OPUNC03G22220 Oryza punctata OPUNC03G22220 I 0.715
OBART03G24120 Oryza barthii OBART03G24120 I 0.715
OS03G0578900 Oryza sativa OS03G0578900 I 0.715
ORGLA03G0224700 Oryza glaberrima ORGLA03G0224700 I 0.715
OMERI03G21920 Oryza meridionalis OMERI03G21920 I 0.715
Bo4g076940 Brassica oleracea Bo4g076940 I 0.715
OB03G32840 Oryza brachyantha OB03G32840 I 0.715
PDK_20s1383724g001 Phoenix dactylifera PDK_20s1383724g001 I 0.713
ONIVA05G21800 Oryza nivara ONIVA05G21800 I 0.712
LjSGA_057622.2 Lotus japonicus LjSGA_057622.2 I 0.712
Si039629m.g Setaria italica Si039629m.g I 0.711
Pavir.Ib03827 Panicum virgatum Pavir.Ib03827 I 0.711
Bra012038 Brassica rapa Bra012038 I 0.706
PGSC0003DMG400027418 Solanum tuberosum PGSC0003DMG400027418 I 0.706
Bo3g021790 Brassica oleracea Bo3g021790 I 0.705
PK15478.1 Cannabis sativa PK15478.1 I 0.705
Bra028997 Brassica rapa Bra028997 I 0.705
GSMUA_Achr10G29280_001 Musa acuminata GSMUA_Achr10G29280_001 I 0.699
MYB97 Arabidopsis thaliana AT4G26930 I 0.698
MYB97 Arabidopsis lyrata fgenesh2_kg.7__1539__AT4G26930.1 I 0.698
LPERR03G20110 Leersia perrieri LPERR03G20110 I 0.695
Sb01g015920 Sorghum bicolor Sb01g015920 I 0.693
AC217264.3_FG005 Zea mays AC217264.3_FG005 I 0.693
GRMZM2G070523 Zea mays GRMZM2G070523 I 0.693
OPUNC06G18670 Oryza punctata OPUNC06G18670 I 0.693
Eucgr.A01122 Eucalyptus grandis Eucgr.A01122 I 0.692
F775_23034 Aegilops tauschii F775_23034 I 0.691
TRIUR3_20797 Triticum urartu TRIUR3_20797 I 0.691
ORGLA06G0168900 Oryza glaberrima ORGLA06G0168900 I 0.689
ORUFI06G21880 Oryza rufipogon ORUFI06G21880 I 0.689
ONIVA06G24230 Oryza nivara ONIVA06G24230 I 0.689
LjSGA_026914.2 Lotus japonicus LjSGA_026914.2 I 0.689
OGLUM06G21530 Oryza glumaepatula OGLUM06G21530 I 0.689
OBART06G20450 Oryza barthii OBART06G20450 I 0.689
OMERI06G21070 Oryza meridionalis OMERI06G21070 I 0.689
OLONG_019401 Oryza longistaminata OLONG_019401 I 0.689
Ca_06236 Cicer arietinum Ca_06236 I 0.682
Thhalv10025350m.g Eutrema salsugineum Thhalv10025350m.g I 0.679
MLOC_6041 Hordeum vulgare MLOC_6041 I 0.678
TRIUR3_15006 Triticum urartu TRIUR3_15006 I 0.673
Bo6g077600 Brassica oleracea Bo6g077600 I 0.669
Bra002042 Brassica rapa Bra002042 I 0.666
Bo1g141040 Brassica oleracea Bo1g141040 I 0.666
Bo3g041750 Brassica oleracea Bo3g041750 I 0.664
Bra000531 Brassica rapa Bra000531 I 0.664
Si007070m.g Setaria italica Si007070m.g I 0.664
Sb10g027280 Sorghum bicolor Sb10g027280 I 0.664
Pavir.Da00534 Panicum virgatum Pavir.Da00534 I 0.664
Sb10g023665 Sorghum bicolor Sb10g023665 I 0.664
AtMYB81 Arabidopsis thaliana AT2G26960 D 0.663
F775_08967 Aegilops tauschii F775_08967 I 0.663
VIT_05s0049g01020 Vitis vinifera VIT_05s0049g01020 I 0.661