Bo5g076300 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo5g076300 T267377_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HHO6
M07024_2.00
Arabidopsis thaliana
GAATCTNNDAT

ATHNNAGATTC
Dap-seq
OMalley et al.(2016)
AT1G49560_col_a
0.753 0.915
HHO6
M07025_2.00
Arabidopsis thaliana
DGAATCTHNGATHCN

NGDATCNDAGATTCH
Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a
0.753 0.915
HHO2
M02290_2.00
Arabidopsis thaliana
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH7115
0.684 0.809
HHO2
M07029_2.00
Arabidopsis thaliana
AKATTCY

RGAATMT
Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a
0.684 0.809
HHO2
M07030_2.00
Arabidopsis thaliana
RDATYNNAGATTC

GAATCTNNRATHY
Dap-seq
OMalley et al.(2016)
At1g68670_col
0.684 0.809
NIGT1
M02328_2.00
Oryza sativa
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH8646
0.674 0.809
HHO3
M02289_2.00
Arabidopsis thaliana
NWGATWCBNN

NNVGWATCWN
PBM
Weirauch et al.(2014)
pTH7278
0.666 0.787
HHO3
M07016_2.00
Arabidopsis thaliana
NNDHNNAAKATTCY

RGAATMTTNNDHNN
Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a
0.666 0.787
HHO3
M07017_2.00
Arabidopsis thaliana
HNNAAKATTCY

RGAATMTTNND
Dap-seq
OMalley et al.(2016)
At1g25550_col
0.666 0.787
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g076300.1 Myb 160 211

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra040662 Brassica rapa Bra040662 I 0.802
LjSGA_025851.1 Lotus japonicus LjSGA_025851.1 I 0.784
Gorai.007G053100 Gossypium raimondii Gorai.007G053100 I 0.759
Cagra.3534s0002 Capsella grandiflora Cagra.3534s0002 I 0.753
Carubv10009677m.g Capsella rubella Carubv10009677m.g I 0.753
Bo6g018370 Brassica oleracea Bo6g018370 I 0.753
fgenesh2_kg.1__4045__AT1G49560.1 Arabidopsis lyrata fgenesh2_kg.1__4045__AT1G49560.1 I 0.753
Bostr.26675s0216 Boechera stricta Bostr.26675s0216 I 0.753
HHO6 Arabidopsis thaliana AT1G49560 D 0.753
GRMZM2G124540 Zea mays GRMZM2G124540 I 0.744
POPTR_0007s11470 Populus trichocarpa POPTR_0007s11470 I 0.738
Pavir.Ia00346 Panicum virgatum Pavir.Ia00346 I 0.735
Sb01g007130 Sorghum bicolor Sb01g007130 I 0.735
GLYMA17G20520 Glycine max GLYMA17G20520 I 0.735
BRADI1G58830 Brachypodium distachyon BRADI1G58830 I 0.735
Si036412m.g Setaria italica Si036412m.g I 0.735
Pavir.J18103 Panicum virgatum Pavir.J18103 I 0.735
estExt_fgenesh1_pg.C_240109 Physcomitrella patens estExt_fgenesh1_pg.C_240109 I 0.729
Solyc02g090400.2 Solanum lycopersicum Solyc02g090400.2 I 0.727
Gorai.008G026300 Gossypium raimondii Gorai.008G026300 I 0.720
PK04145.1 Cannabis sativa PK04145.1 I 0.720
Gorai.013G040600 Gossypium raimondii Gorai.013G040600 I 0.720
SapurV1A.1020s0030 Salix purpurea SapurV1A.1020s0030 I 0.720
PRUPE_ppa006812mg Prunus persica PRUPE_ppa006812mg I 0.720
POPTR_0004s15220 Populus trichocarpa POPTR_0004s15220 I 0.720
evm.TU.supercontig_62.51 Carica papaya evm.TU.supercontig_62.51 I 0.720
gene24094-v1.0-hybrid Fragaria vesca gene24094-v1.0-hybrid I 0.720
gene31899-v1.0-hybrid Fragaria vesca gene31899-v1.0-hybrid I 0.720
POPTR_0009s10980 Populus trichocarpa POPTR_0009s10980 I 0.720
POPTR_0005s14120 Populus trichocarpa POPTR_0005s14120 I 0.720
Solyc01g108300.2 Solanum lycopersicum Solyc01g108300.2 I 0.720
cassava20352.m1 Manihot esculenta cassava20352.m1 I 0.720
cassava29454.valid.m1 Manihot esculenta cassava29454.valid.m1 I 0.720
VIT_03s0063g01060 Vitis vinifera VIT_03s0063g01060 I 0.720
VIT_07s0197g00060 Vitis vinifera VIT_07s0197g00060 I 0.720
29780.m001324 Ricinus communis 29780.m001324 I 0.720
Pm021479 Prunus mume Pm021479 I 0.720
Ciclev10028556m.g Citrus clementina Ciclev10028556m.g I 0.720
TCM_006998 Theobroma cacao TCM_006998 I 0.720
cassava11925.valid.m1 Manihot esculenta cassava11925.valid.m1 I 0.720
cassava29869.valid.m1 Manihot esculenta cassava29869.valid.m1 I 0.720
Eucgr.G01503 Eucalyptus grandis Eucgr.G01503 I 0.720
Lus10020995.g Linum usitatissimum Lus10020995.g I 0.720
TCM_000558 Theobroma cacao TCM_000558 I 0.720
Eucgr.H01993 Eucalyptus grandis Eucgr.H01993 I 0.720
Gorai.008G073300 Gossypium raimondii Gorai.008G073300 I 0.720
SapurV1A.0090s0480 Salix purpurea SapurV1A.0090s0480 I 0.720
MDP0000200243 Malus domestica MDP0000200243 I 0.720
GLYMA01G39040 Glycine max GLYMA01G39040 I 0.720
orange1.1g015403m.g Citrus sinensis orange1.1g015403m.g I 0.720
GLYMA11G06230 Glycine max GLYMA11G06230 I 0.720
Cucsa.220080 Cucumis sativus Cucsa.220080 I 0.714
29676.m001636 Ricinus communis 29676.m001636 I 0.714
Cla016244 Citrullus lanatus Cla016244 I 0.714
chr2.LjT16G06.130.nd Lotus japonicus chr2.LjT16G06.130.nd I 0.712
PGSC0003DMG400025801 Solanum tuberosum PGSC0003DMG400025801 I 0.712
PGSC0003DMG400010067 Solanum tuberosum PGSC0003DMG400010067 I 0.712
Traes_5DL_B2F166A31 Triticum aestivum Traes_5DL_B2F166A31 I 0.696
Traes_5BL_1AE458202 Triticum aestivum Traes_5BL_1AE458202 I 0.696
MLOC_61146 Hordeum vulgare MLOC_61146 I 0.696
MLOC_67453 Hordeum vulgare MLOC_67453 I 0.696
LPERR07G01210 Leersia perrieri LPERR07G01210 I 0.696
OB07G11040 Oryza brachyantha OB07G11040 I 0.696
Traes_2AL_92939B028 Triticum aestivum Traes_2AL_92939B028 I 0.696
F775_09486 Aegilops tauschii F775_09486 I 0.696
F775_07581 Aegilops tauschii F775_07581 I 0.696
Traes_2BL_EED456A17 Triticum aestivum Traes_2BL_EED456A17 I 0.696
OS07G0119300 Oryza sativa OS07G0119300 I 0.696
Traes_5AL_D98C7CE92 Triticum aestivum Traes_5AL_D98C7CE92 I 0.696
BGIOSGA013620 Oryza indica BGIOSGA013620 I 0.696
BGIOSGA025055 Oryza indica BGIOSGA025055 I 0.696
BRADI1G07630 Brachypodium distachyon BRADI1G07630 I 0.696
LPERR03G29610 Leersia perrieri LPERR03G29610 I 0.696
OPUNC03G32250 Oryza punctata OPUNC03G32250 I 0.696
OPUNC07G01230 Oryza punctata OPUNC07G01230 I 0.696
OGLUM03G34980 Oryza glumaepatula OGLUM03G34980 I 0.696
ORGLA01G0412400 Oryza glaberrima ORGLA01G0412400 I 0.696
OGLUM07G01230 Oryza glumaepatula OGLUM07G01230 I 0.696
OLONG_003720 Oryza longistaminata OLONG_003720 I 0.696
OMERI07G00590 Oryza meridionalis OMERI07G00590 I 0.696
OS03G0764600 Oryza sativa OS03G0764600 I 0.696
ONIVA03G36730 Oryza nivara ONIVA03G36730 I 0.696
ONIVA07G00160 Oryza nivara ONIVA07G00160 I 0.696
OB03G42230 Oryza brachyantha OB03G42230 I 0.696
ORGLA03G0322500 Oryza glaberrima ORGLA03G0322500 I 0.696
ORGLA10G0167800 Oryza glaberrima ORGLA10G0167800 I 0.696
OMERI03G32430 Oryza meridionalis OMERI03G32430 I 0.696
ORUFI03G36670 Oryza rufipogon ORUFI03G36670 I 0.696
OLONG_019215 Oryza longistaminata OLONG_019215 I 0.696
OBART07G01330 Oryza barthii OBART07G01330 I 0.696
ORGLA07G0012100 Oryza glaberrima ORGLA07G0012100 I 0.696
OBART03G35220 Oryza barthii OBART03G35220 I 0.696
ORUFI07G01280 Oryza rufipogon ORUFI07G01280 I 0.696
Bra018794 Brassica rapa Bra018794 I 0.693
Thhalv10011605m.g Eutrema salsugineum Thhalv10011605m.g I 0.693
Lus10012056.g Linum usitatissimum Lus10012056.g I 0.685
Ca_02122 Cicer arietinum Ca_02122 I 0.685
Gorai.012G150500 Gossypium raimondii Gorai.012G150500 I 0.685
MTR_5g017980 Medicago truncatula MTR_5g017980 I 0.685
GSMUA_Achr10G08270_001 Musa acuminata GSMUA_Achr10G08270_001 I 0.685
MDP0000504079 Malus domestica MDP0000504079 I 0.685
Bra004330 Brassica rapa Bra004330 I 0.684
Bo6g107160 Brassica oleracea Bo6g107160 I 0.684
Thhalv10018737m.g Eutrema salsugineum Thhalv10018737m.g I 0.684
Bo2g061130 Brassica oleracea Bo2g061130 I 0.684
Carubv10020552m.g Capsella rubella Carubv10020552m.g I 0.684
Cagra.0613s0015 Capsella grandiflora Cagra.0613s0015 I 0.684
Bostr.26959s0022 Boechera stricta Bostr.26959s0022 I 0.684
Bra038360 Brassica rapa Bra038360 I 0.684
HHO2 Arabidopsis thaliana AT1G68670 D 0.684
fgenesh2_kg.2__1124__AT1G68670.1 Arabidopsis lyrata fgenesh2_kg.2__1124__AT1G68670.1 I 0.684
AMTR_s00122p00127250 Amborella trichopoda AMTR_s00122p00127250 I 0.680
AMTR_s00033p00241280 Amborella trichopoda AMTR_s00033p00241280 I 0.680
fgenesh1_pg.scaffold_166000054 Physcomitrella patens fgenesh1_pg.scaffold_166000054 I 0.680
SELMODRAFT_402040 Selaginella moellendorffii SELMODRAFT_402040 I 0.680
SELMODRAFT_423260 Selaginella moellendorffii SELMODRAFT_423260 I 0.680
GSMUA_Achr6G34680_001 Musa acuminata GSMUA_Achr6G34680_001 I 0.680
Eucgr.I01178 Eucalyptus grandis Eucgr.I01178 I 0.680
Cucsa.110080 Cucumis sativus Cucsa.110080 I 0.678
SapurV1A.0641s0120 Salix purpurea SapurV1A.0641s0120 I 0.677
Traes_2DL_64EAA3388 Triticum aestivum Traes_2DL_64EAA3388 I 0.677
MDP0000265555 Malus domestica MDP0000265555 I 0.677
PRUPE_ppa006879mg Prunus persica PRUPE_ppa006879mg I 0.677
GRMZM2G171468 Zea mays GRMZM2G171468 I 0.675
Gorai.008G185500 Gossypium raimondii Gorai.008G185500 I 0.674
Pavir.Ab00626 Panicum virgatum Pavir.Ab00626 I 0.674
Aquca_026_00236 Aquilegia coerulea Aquca_026_00236 I 0.674
Pavir.Aa02952 Panicum virgatum Pavir.Aa02952 I 0.674
evm.TU.supercontig_1.213 Carica papaya evm.TU.supercontig_1.213 I 0.674
Sb08g003180 Sorghum bicolor Sb08g003180 I 0.674
ONIVA02G15910 Oryza nivara ONIVA02G15910 I 0.674
OMERI02G14870 Oryza meridionalis OMERI02G14870 I 0.674
OGLUM02G14610 Oryza glumaepatula OGLUM02G14610 I 0.674
OPUNC02G13150 Oryza punctata OPUNC02G13150 I 0.674
ORGLA02G0127400 Oryza glaberrima ORGLA02G0127400 I 0.674
PGSC0003DMG400000828 Solanum tuberosum PGSC0003DMG400000828 I 0.674
NIGT1 Oryza sativa OS02G0325600 D 0.674
OBART02G14690 Oryza barthii OBART02G14690 I 0.674
OB02G22950 Oryza brachyantha OB02G22950 I 0.674
F775_13221 Aegilops tauschii F775_13221 I 0.674
BRADI3G10730 Brachypodium distachyon BRADI3G10730 I 0.674
AMTR_s00093p00110710 Amborella trichopoda AMTR_s00093p00110710 I 0.674
GRMZM2G016370 Zea mays GRMZM2G016370 I 0.674
GRMZM2G159119 Zea mays GRMZM2G159119 I 0.674
MLOC_72007 Hordeum vulgare MLOC_72007 I 0.674
LPERR02G11880 Leersia perrieri LPERR02G11880 I 0.674
POPTR_0008s11630 Populus trichocarpa POPTR_0008s11630 I 0.674
ORUFI02G14900 Oryza rufipogon ORUFI02G14900 I 0.674
TCM_011857 Theobroma cacao TCM_011857 I 0.674
VIT_01s0011g03110 Vitis vinifera VIT_01s0011g03110 I 0.674
SapurV1A.1001s0050 Salix purpurea SapurV1A.1001s0050 I 0.674
Cla008104 Citrullus lanatus Cla008104 I 0.674
Solyc05g009720.2 Solanum lycopersicum Solyc05g009720.2 I 0.674
Traes_2BS_10A8CAB27 Triticum aestivum Traes_2BS_10A8CAB27 I 0.674
cassava11986.valid.m1 Manihot esculenta cassava11986.valid.m1 I 0.674
Cucsa.365440 Cucumis sativus Cucsa.365440 I 0.674
SELMODRAFT_66160 Selaginella moellendorffii SELMODRAFT_66160 I 0.674
28883.m000751 Ricinus communis 28883.m000751 I 0.674
Lus10019639.g Linum usitatissimum Lus10019639.g I 0.673
Lus10009334.g Linum usitatissimum Lus10009334.g I 0.673
Lus10034280.g Linum usitatissimum Lus10034280.g I 0.672
Pm026452 Prunus mume Pm026452 I 0.671
Lus10041485.g Linum usitatissimum Lus10041485.g I 0.667
Lus10021699.g Linum usitatissimum Lus10021699.g I 0.667
Lus10035043.g Linum usitatissimum Lus10035043.g I 0.667
Thhalv10008115m.g Eutrema salsugineum Thhalv10008115m.g I 0.666
Bostr.12659s0399 Boechera stricta Bostr.12659s0399 I 0.666
HHO3 Arabidopsis thaliana AT1G25550 D 0.666
Cagra.3392s0001 Capsella grandiflora Cagra.3392s0001 I 0.666
Carubv10009492m.g Capsella rubella Carubv10009492m.g I 0.666
Al_scaffold_0001_2706 Arabidopsis lyrata Al_scaffold_0001_2706 I 0.666
Si030286m.g Setaria italica Si030286m.g I 0.665
GSMUA_Achr6G09870_001 Musa acuminata GSMUA_Achr6G09870_001 I 0.663
mgf010394m Mimulus guttatus mgf010394m I 0.662
Si019945m.g Setaria italica Si019945m.g I 0.661
GRMZM2G173882 Zea mays GRMZM2G173882 I 0.661
GRMZM2G100176 Zea mays GRMZM2G100176 I 0.661
Sb02g001600 Sorghum bicolor Sb02g001600 I 0.661
Cla020676 Citrullus lanatus Cla020676 I 0.661
mgf011229m Mimulus guttatus mgf011229m I 0.661
Cucsa.283860 Cucumis sativus Cucsa.283860 I 0.661
mgf013442m Mimulus guttatus mgf013442m I 0.661