CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo7g003580
(
Brassica oleracea
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bo7g003580
T267465_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT2G20400
M07046_2.00
Arabidopsis thaliana
NDNNDNHNNVDDDNNNHAWRGMATATTCB
VGAATATKCYWTDNNNHHHBNNDNHNNHN
Dap-seq
OMalley et al.(2016)
AT2G20400_col_a
0.708
0.851
AT2G20400
M07047_2.00
Arabidopsis thaliana
RDRGAATATTCBNWD
HWNVGAATATTCYHY
Dap-seq
OMalley et al.(2016)
AT2G20400_colamp_a
0.708
0.851
PHL1
M02310_2.00
Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7122
0.682
0.851
PHL1
M07132_2.00
Arabidopsis thaliana
MDRGAATATTCBNWN
NWNVGAATATTCYHK
Dap-seq
OMalley et al.(2016)
At5g29000_col_a
0.682
0.851
PHR1
M02302_2.00
Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7249
0.671
0.851
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.671
0.830
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo7g003580.1
Myb
178
229
RVRWTPELHETFVEAVNQLGGMENAKPKAVLKHMKVQGLTIYHVKSHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Brassica oleracea
TFs
115 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra036469
Brassica rapa
Bra036469
I
0.847
Bo9g028250
Brassica oleracea
Bo9g028250
I
0.800
Bra036679
Brassica rapa
Bra036679
I
0.800
scaffold_304362.1
Arabidopsis lyrata
scaffold_304362.1
I
0.749
Bostr.7903s0128
Boechera stricta
Bostr.7903s0128
I
0.749
cassava37547.valid.m1
Manihot esculenta
cassava37547.valid.m1
I
0.731
Ca_12255
Cicer arietinum
Ca_12255
I
0.731
29637.m000753
Ricinus communis
29637.m000753
I
0.731
AMTR_s00142p00049490
Amborella trichopoda
AMTR_s00142p00049490
I
0.731
GSMUA_Achr8G12580_001
Musa acuminata
GSMUA_Achr8G12580_001
I
0.731
MTR_7g098250
Medicago truncatula
MTR_7g098250
I
0.731
Sb01g036440
Sorghum bicolor
Sb01g036440
I
0.731
Si035682m.g
Setaria italica
Si035682m.g
I
0.731
VIT_07s0005g04120
Vitis vinifera
VIT_07s0005g04120
I
0.731
Ciclev10019956m.g
Citrus clementina
Ciclev10019956m.g
I
0.731
Pavir.Ia03429
Panicum virgatum
Pavir.Ia03429
I
0.731
Pavir.J39104
Panicum virgatum
Pavir.J39104
I
0.731
PK01035.1
Cannabis sativa
PK01035.1
I
0.731
chr1.CM0295.930.nd
Lotus japonicus
chr1.CM0295.930.nd
I
0.731
orange1.1g011805m.g
Citrus sinensis
orange1.1g011805m.g
I
0.731
MDP0000321461
Malus domestica
MDP0000321461
I
0.731
Gorai.007G149100
Gossypium raimondii
Gorai.007G149100
I
0.731
Lus10022885.g
Linum usitatissimum
Lus10022885.g
I
0.731
Lus10024938.g
Linum usitatissimum
Lus10024938.g
I
0.731
MDP0000285150
Malus domestica
MDP0000285150
I
0.731
GSMUA_Achr5G12960_001
Musa acuminata
GSMUA_Achr5G12960_001
I
0.731
TCM_003939
Theobroma cacao
TCM_003939
I
0.731
GRMZM2G006477
Zea mays
GRMZM2G006477
I
0.731
GLYMA19G35080
Glycine max
GLYMA19G35080
I
0.731
GLYMA13G18805
Glycine max
GLYMA13G18805
I
0.731
GLYMA03G32350
Glycine max
GLYMA03G32350
I
0.731
GLYMA10G04540
Glycine max
GLYMA10G04540
I
0.731
Ca_03781
Cicer arietinum
Ca_03781
I
0.723
GLYMA19G43690
Glycine max
GLYMA19G43690
I
0.723
LjSGA_026114.1
Lotus japonicus
LjSGA_026114.1
I
0.723
MTR_1g080330
Medicago truncatula
MTR_1g080330
I
0.723
Bra036123
Brassica rapa
Bra036123
I
0.721
Bo9g010090
Brassica oleracea
Bo9g010090
I
0.721
Sb02g010520
Sorghum bicolor
Sb02g010520
I
0.720
Pavir.Ba02554
Panicum virgatum
Pavir.Ba02554
I
0.720
MDP0000248927
Malus domestica
MDP0000248927
I
0.720
GSMUA_Achr11G02560_001
Musa acuminata
GSMUA_Achr11G02560_001
I
0.720
Pavir.Bb01566
Panicum virgatum
Pavir.Bb01566
I
0.720
Si029945m.g
Setaria italica
Si029945m.g
I
0.720
PRUPE_ppa004886mg
Prunus persica
PRUPE_ppa004886mg
I
0.720
PDK_20s1306081g005
Phoenix dactylifera
PDK_20s1306081g005
I
0.720
gene08317-v1.0-hybrid
Fragaria vesca
gene08317-v1.0-hybrid
I
0.720
GSMUA_Achr4G30200_001
Musa acuminata
GSMUA_Achr4G30200_001
I
0.717
Thhalv10002005m.g
Eutrema salsugineum
Thhalv10002005m.g
I
0.715
POPTR_0013s04530
Populus trichocarpa
POPTR_0013s04530
I
0.710
cassava31821.valid.m1
Manihot esculenta
cassava31821.valid.m1
I
0.709
AT2G20400
Arabidopsis thaliana
AT2G20400
D
0.708
SapurV1A.0309s0130
Salix purpurea
SapurV1A.0309s0130
I
0.698
Lus10008197.g
Linum usitatissimum
Lus10008197.g
I
0.692
POPTR_0019s03750
Populus trichocarpa
POPTR_0019s03750
I
0.692
SapurV1A.0307s0080
Salix purpurea
SapurV1A.0307s0080
I
0.692
Lus10029607.g
Linum usitatissimum
Lus10029607.g
I
0.691
gene16679-v1.0-hybrid
Fragaria vesca
gene16679-v1.0-hybrid
I
0.689
Pm003600
Prunus mume
Pm003600
I
0.689
PRUPE_ppa005708mg
Prunus persica
PRUPE_ppa005708mg
I
0.689
VIT_14s0036g01380
Vitis vinifera
VIT_14s0036g01380
I
0.687
Gorai.007G274700
Gossypium raimondii
Gorai.007G274700
I
0.686
SELMODRAFT_447260
Selaginella moellendorffii
SELMODRAFT_447260
I
0.684
MTR_7g115530
Medicago truncatula
MTR_7g115530
I
0.684
PDK_20s1384631g001
Phoenix dactylifera
PDK_20s1384631g001
I
0.684
SELMODRAFT_405399
Selaginella moellendorffii
SELMODRAFT_405399
I
0.684
Gorai.004G023100
Gossypium raimondii
Gorai.004G023100
I
0.683
PHL1
Arabidopsis lyrata
fgenesh2_kg.6__2806__AT5G29000.2
I
0.682
Bostr.23151s0001
Boechera stricta
Bostr.23151s0001
I
0.682
PHL1
Arabidopsis thaliana
AT5G29000
D
0.682
cassava22661.valid.m1
Manihot esculenta
cassava22661.valid.m1
I
0.681
Eucgr.B02155
Eucalyptus grandis
Eucgr.B02155
I
0.680
GSMUA_Achr2G10180_001
Musa acuminata
GSMUA_Achr2G10180_001
I
0.676
Bra010355
Brassica rapa
Bra010355
I
0.671
OMERI03G14370
Oryza meridionalis
OMERI03G14370
I
0.671
Lus10022886.g
Linum usitatissimum
Lus10022886.g
I
0.671
Bra020622
Brassica rapa
Bra020622
I
0.671
PHR1
Oryza indica
BGIOSGA012553
I
0.671
LPERR03G14050
Leersia perrieri
LPERR03G14050
I
0.671
SapurV1A.0252s0390
Salix purpurea
SapurV1A.0252s0390
I
0.671
ONIVA03G17050
Oryza nivara
ONIVA03G17050
I
0.671
Bo2g151830
Brassica oleracea
Bo2g151830
I
0.671
OB03G25800
Oryza brachyantha
OB03G25800
I
0.671
Bo8g054450
Brassica oleracea
Bo8g054450
I
0.671
OLONG_005622
Oryza longistaminata
OLONG_005622
I
0.671
Eucgr.A01323
Eucalyptus grandis
Eucgr.A01323
I
0.671
mgf005047m
Mimulus guttatus
mgf005047m
I
0.671
Aquca_017_00793
Aquilegia coerulea
Aquca_017_00793
I
0.671
Bostr.7867s0704
Boechera stricta
Bostr.7867s0704
I
0.671
Thhalv10025330m.g
Eutrema salsugineum
Thhalv10025330m.g
I
0.671
PHR1
Arabidopsis lyrata
fgenesh2_kg.7__1335__AT4G28610.1
I
0.671
Solyc09g072830.2
Solanum lycopersicum
Solyc09g072830.2
I
0.671
Solyc06g008200.2
Solanum lycopersicum
Solyc06g008200.2
I
0.671
OPUNC03G15590
Oryza punctata
OPUNC03G15590
I
0.671
PK01823.1
Cannabis sativa
PK01823.1
I
0.671
TCM_026171
Theobroma cacao
TCM_026171
I
0.671
evm.TU.supercontig_87.3
Carica papaya
evm.TU.supercontig_87.3
I
0.671
ORGLA03G0154000
Oryza glaberrima
ORGLA03G0154000
I
0.671
PHR1
Oryza sativa
OS03G0329900
D
0.671
Cagra.1225s0029
Capsella grandiflora
Cagra.1225s0029
I
0.671
Carubv10001064m.g
Capsella rubella
Carubv10001064m.g
I
0.671
PHR1
Arabidopsis thaliana
AT4G28610
D
0.671
Lus10032778.g
Linum usitatissimum
Lus10032778.g
I
0.670
fgenesh1_pm.C_scaffold_3000324
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_3000324
I
0.670
estExt_fgenesh1_pg.C_2260017
Physcomitrella patens
estExt_fgenesh1_pg.C_2260017
I
0.665
estExt_fgenesh1_pg.C_2690029
Physcomitrella patens
estExt_fgenesh1_pg.C_2690029
I
0.665
chr1.CM0600.200.nd
Lotus japonicus
chr1.CM0600.200.nd
I
0.663
GLYMA03G41040
Glycine max
GLYMA03G41040
I
0.663
ORUFI02G38560
Oryza rufipogon
ORUFI02G38560
I
0.661
OLONG_010553
Oryza longistaminata
OLONG_010553
I
0.661
OB02G43730
Oryza brachyantha
OB02G43730
I
0.661
TRIUR3_02291
Triticum urartu
TRIUR3_02291
I
0.661
Carubv10002022m.g
Capsella rubella
Carubv10002022m.g
I
0.661
BGIOSGA005373
Oryza indica
BGIOSGA005373
I
0.661
Traes_6BL_5D8EE6802
Triticum aestivum
Traes_6BL_5D8EE6802
I
0.661