Bra001005 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra001005 T267691_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB57
M01072_2.00
Arabidopsis thaliana
RCCTAAYT

ARTTAGGY
PBM
Sullivan et al.(2014)
pTH9748
0.864 0.957
MYB57
M07059_2.00
Arabidopsis thaliana
YNTACCTAACTHHH

DDDAGTTAGGTANR
Dap-seq
OMalley et al.(2016)
MYB57_col_a
0.864 0.957
MYB57
M07060_2.00
Arabidopsis thaliana
ACCTAAY

RTTAGGT
Dap-seq
OMalley et al.(2016)
MYB57_colamp_a
0.864 0.957
MYB05_ANTMA
M11067_2.00
Antirrhinum majus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB305_Q3
0.787 0.828
MYB24
M02311_2.00
Arabidopsis thaliana
RCCDAMYNN

NNRKTHGGY
PBM
Weirauch et al.(2014)
pTH8662
0.771 0.849
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN

NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.686 0.731
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH

DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.686 0.731
MYB116
M07014_2.00
Arabidopsis thaliana
NRCCTAAYTWNWNNN

NNNWNWARTTAGGYN
Dap-seq
OMalley et al.(2016)
MYB116_col_a
0.679 0.710
MYB116
M07015_2.00
Arabidopsis thaliana
HNTRCCTAACTHH

DDAGTTAGGYAND
Dap-seq
OMalley et al.(2016)
MYB116_colamp_a
0.679 0.710
GAM1_ORYSI
M11055_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.667 0.645
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra001005.1-P Myb 24 71
Bra001005.1-P Myb 77 135

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

304 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CANTEDRAFT_107875 Candida tenuis CANTEDRAFT_107875 I 0.000
CaO19.1187 Candida albicans CaO19.1187 I 0.000
CaO19.8778 Candida albicans CaO19.8778 I 0.000
CD36_60230 Candida dubliniensis CD36_60230 I 0.000
CLUG_00757 Candida lusitaniae CLUG_00757 N 0.000
CLUG_00757 Clavispora lusitaniae CLUG_00757 N 0.000
CORT_0F04410 Candida orthopsilosis CORT_0F04410 N 0.000
CPAG_03745 Candida parapsilosis CPAG_03745 N 0.000
CTRG_03014 Candida tropicalis CTRG_03014 I 0.000
Ecym_1333 Eremothecium cymbalariae Ecym_1333 I 0.000
estExt_genewise1_human.C_chr_5.10129 Pichia stipitis estExt_genewise1_human.C_chr_5.10129 I 0.000
G210_3997 Candida maltosa G210_3997 I 0.000
GNLVRS01_PISO0D07923g Millerozyma farinosa GNLVRS01_PISO0D07923g N 0.000
KLTH0E02376g Kluyveromyces thermotolerans KLTH0E02376g I 0.000
KLTH0E02376g Lachancea thermotolerans KLTH0E02376g I 0.000
KUCA_T00002265001 Kuraishia capsulata KUCA_T00002265001 I 0.000
LELG_04654 Lodderomyces elongisporus LELG_04654 N 0.000
PAS_chr3_0712 Komagataella pastoris PAS_chr3_0712 I 0.000
PAS_chr3_1209 Komagataella pastoris PAS_chr3_1209 N 0.000
PGUG_02866 Candida guilliermondii PGUG_02866 I 0.000
PGUG_02866 Meyerozyma guilliermondii PGUG_02866 I 0.000
PICST_72282 Scheffersomyces stipitis PICST_72282 I 0.000
SAKL0G07282g Lachancea kluyveri SAKL0G07282g I 0.000
XP_002492922.1 Pichia pastoris XP_002492922.1 N 0.000
XP_002492941.1 Pichia pastoris XP_002492941.1 I 0.000
ZBAI_02175 Zygosaccharomyces bailii ZBAI_02175 I 0.000
ZBAI_08029 Zygosaccharomyces bailii ZBAI_08029 I 0.000