Bra001323 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra001323 T267696_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN

NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.757 0.785
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH

DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
0.748 0.796
PK28565.1
M02357_2.00
Cannabis sativa
TAACBGTY

RACVGTTA
PBM
Weirauch et al.(2014)
pTH9653
0.675 0.688
AtMYB70
M01071_2.00
Arabidopsis thaliana
HAACBRHHN

NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH8588
0.675 0.677
AtMYB70
M07048_2.00
Arabidopsis thaliana
YAACBGWHWWAAMN

NKTTWWDWCVGTTR
Dap-seq
OMalley et al.(2016)
MYB70_col_a
0.675 0.677
MYB44
M01082_2.00
Arabidopsis thaliana
HAACBRHHN

NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH7078
0.670 0.634
MYB44
M07155_2.00
Arabidopsis thaliana
HDTAACBGWHW

WDWCVGTTAHD
Dap-seq
OMalley et al.(2016)
MYB44_colamp_a
0.670 0.634
MYB44
M07156_2.00
Arabidopsis thaliana
HAACBRWHWWAACBGHHWH

DWDDCVGTTWWDWYVGTTD
Dap-seq
OMalley et al.(2016)
MYB44_col
0.670 0.634
MYB73
M07114_2.00
Arabidopsis thaliana
TAACBGWHWHW

WDWDWCVGTTA
Dap-seq
OMalley et al.(2016)
MYB73_col_a
0.670 0.656
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra001323.1-P Myb 10 56
Bra001323.1-P Myb 62 107

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo3g062160 Brassica oleracea Bo3g062160 I 0.864
Bra034057 Brassica rapa Bra034057 I 0.837
Bo1g144680 Brassica oleracea Bo1g144680 I 0.826
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I 0.817
Bo7g117880 Brassica oleracea Bo7g117880 I 0.807
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.792
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I 0.791
Bra007186 Brassica rapa Bra007186 I 0.779
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I 0.770
Bo8g090160 Brassica oleracea Bo8g090160 I 0.770
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I 0.770
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I 0.769
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I 0.769
PK07741.1 Cannabis sativa PK07741.1 D 0.757
Carubv10013882m.g Capsella rubella Carubv10013882m.g I 0.752
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I 0.752
Cagra.2515s0014 Capsella grandiflora Cagra.2515s0014 I 0.752
OMERI01G34370 Oryza meridionalis OMERI01G34370 I 0.749
MYB1 Arabidopsis thaliana AT3G09230 D 0.748
BGIOSGA000485 Oryza indica BGIOSGA000485 I 0.746
ORUFI01G40770 Oryza rufipogon ORUFI01G40770 I 0.746
OBART01G37390 Oryza barthii OBART01G37390 I 0.746
ORGLA01G0312200 Oryza glaberrima ORGLA01G0312200 I 0.746
OLONG_001357 Oryza longistaminata OLONG_001357 I 0.746
ONIVA01G42300 Oryza nivara ONIVA01G42300 I 0.746
OGLUM01G41330 Oryza glumaepatula OGLUM01G41330 I 0.746
OPUNC01G36300 Oryza punctata OPUNC01G36300 I 0.746
OS01G0850400 Oryza sativa OS01G0850400 I 0.746
TCM_042629 Theobroma cacao TCM_042629 I 0.738
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I 0.738
Pm018862 Prunus mume Pm018862 I 0.737
Bra005006 Brassica rapa Bra005006 I 0.736
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I 0.735
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.734
Bo4g025810 Brassica oleracea Bo4g025810 I 0.731
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.731
MYB109 Arabidopsis thaliana AT3G55730 I 0.730
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I 0.728
Si001686m.g Setaria italica Si001686m.g I 0.718
GSMUA_Achr9G03720_001 Musa acuminata GSMUA_Achr9G03720_001 I 0.717
OB01G46120 Oryza brachyantha OB01G46120 I 0.716
LPERR01G32110 Leersia perrieri LPERR01G32110 I 0.716
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I 0.716
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.710
Cla021015 Citrullus lanatus Cla021015 I 0.708
Lus10028250.g Linum usitatissimum Lus10028250.g I 0.708
Lus10040239.g Linum usitatissimum Lus10040239.g I 0.708
MDP0000284922 Malus domestica MDP0000284922 I 0.708
Cagra.0003s0013 Capsella grandiflora Cagra.0003s0013 I 0.706
Carubv10017397m.g Capsella rubella Carubv10017397m.g I 0.706
GLYMA03G15810 Glycine max GLYMA03G15810 I 0.705
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.704
MYB25 Arabidopsis lyrata Al_scaffold_0004_2572 I 0.704
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I 0.704
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I 0.702
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I 0.702
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.701
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I 0.701
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.701
gene09039-v1.0-hybrid Fragaria vesca gene09039-v1.0-hybrid I 0.700
Eucgr.F02372 Eucalyptus grandis Eucgr.F02372 I 0.700
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.699
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I 0.698
GLYMA14G06870 Glycine max GLYMA14G06870 I 0.698
Ca_12468 Cicer arietinum Ca_12468 I 0.696
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I 0.694
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.693
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.693
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I 0.692
gene18756-v1.0-hybrid Fragaria vesca gene18756-v1.0-hybrid I 0.691
Eucgr.F00031 Eucalyptus grandis Eucgr.F00031 I 0.691
MDP0000807341 Malus domestica MDP0000807341 I 0.691
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I 0.689
Cucsa.073130 Cucumis sativus Cucsa.073130 I 0.688
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I 0.687
mgf002573m Mimulus guttatus mgf002573m I 0.686
Lus10021762.g Linum usitatissimum Lus10021762.g I 0.686
GLYMA01G26650 Glycine max GLYMA01G26650 I 0.686
Cla022947 Citrullus lanatus Cla022947 I 0.685
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.685
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I 0.685
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I 0.685
Sb03g039950 Sorghum bicolor Sb03g039950 I 0.685
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I 0.685
GRMZM2G169316 Zea mays GRMZM2G169316 I 0.685
Pavir.J13677 Panicum virgatum Pavir.J13677 I 0.685
GLYMA04G04490 Glycine max GLYMA04G04490 I 0.683
Ciclev10012003m.g Citrus clementina Ciclev10012003m.g I 0.682
mgf023922m Mimulus guttatus mgf023922m I 0.682
orange1.1g017566m.g Citrus sinensis orange1.1g017566m.g I 0.682
Cucsa.123440 Cucumis sativus Cucsa.123440 I 0.681
Solyc05g052850.2 Solanum lycopersicum Solyc05g052850.2 I 0.681
GSMUA_Achr4G12950_001 Musa acuminata GSMUA_Achr4G12950_001 I 0.681
MLOC_10322 Hordeum vulgare MLOC_10322 I 0.680
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I 0.680
MDP0000478512 Malus domestica MDP0000478512 I 0.678
TCM_021796 Theobroma cacao TCM_021796 I 0.678
SapurV1A.0650s0070 Salix purpurea SapurV1A.0650s0070 I 0.678
GLYMA17G35620 Glycine max GLYMA17G35620 I 0.676
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I 0.676
MYB109 Arabidopsis lyrata fgenesh2_kg.5__1999__AT3G55730.1 I 0.676
MDP0000894463 Malus domestica MDP0000894463 I 0.676
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I 0.676
Pm005220 Prunus mume Pm005220 I 0.676
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I 0.676
Lus10032764.g Linum usitatissimum Lus10032764.g I 0.676
PRUPE_ppa010735mg Prunus persica PRUPE_ppa010735mg I 0.676
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I 0.676
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I 0.675
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I 0.675
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I 0.675
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I 0.675
PK28565.1 Cannabis sativa PK28565.1 D 0.675
MDP0000232454 Malus domestica MDP0000232454 I 0.675
Lus10030336.g Linum usitatissimum Lus10030336.g I 0.675
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I 0.675
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I 0.675
MDP0000196986 Malus domestica MDP0000196986 I 0.675
Lus10010260.g Linum usitatissimum Lus10010260.g I 0.675
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I 0.675
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I 0.675
AtMYB70 Arabidopsis thaliana AT2G23290 D 0.675
Cla004431 Citrullus lanatus Cla004431 I 0.675
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I 0.675
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I 0.675
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I 0.675
29970.m000987 Ricinus communis 29970.m000987 I 0.675
TCM_000696 Theobroma cacao TCM_000696 I 0.675
MTR_5g016510 Medicago truncatula MTR_5g016510 I 0.675
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I 0.675
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I 0.675
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I 0.675
GLYMA11G05550 Glycine max GLYMA11G05550 I 0.675
GLYMA01G39740 Glycine max GLYMA01G39740 I 0.675
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I 0.675
GLYMA14G09540 Glycine max GLYMA14G09540 I 0.674
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I 0.673
POPTR_0009s09890 Populus trichocarpa POPTR_0009s09890 I 0.673
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I 0.673
Ca_02182 Cicer arietinum Ca_02182 I 0.672
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I 0.672
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I 0.672
GLYMA02G42030 Glycine max GLYMA02G42030 I 0.672
Lus10007503.g Linum usitatissimum Lus10007503.g I 0.672
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I 0.672
Cucsa.102710 Cucumis sativus Cucsa.102710 I 0.672
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.672
Cla014191 Citrullus lanatus Cla014191 I 0.672
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I 0.671
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I 0.671
Bra012149 Brassica rapa Bra012149 I 0.670
MYB73 Arabidopsis thaliana AT4G37260 D 0.670
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.670
Carubv10007638m.g Capsella rubella Carubv10007638m.g I 0.670
Cagra.1232s0025 Capsella grandiflora Cagra.1232s0025 I 0.670
Bra010593 Brassica rapa Bra010593 I 0.670
Bo2g167960 Brassica oleracea Bo2g167960 I 0.670
Bo1g004900 Brassica oleracea Bo1g004900 I 0.670
MYB44 Arabidopsis thaliana AT5G67300 D 0.670
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.670
Bostr.7867s1585 Boechera stricta Bostr.7867s1585 I 0.670
SapurV1A.0339s0020 Salix purpurea SapurV1A.0339s0020 I 0.670
Bo7g063830 Brassica oleracea Bo7g063830 I 0.670
Bra011749 Brassica rapa Bra011749 I 0.670
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.670
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.670
Thhalv10025742m.g Eutrema salsugineum Thhalv10025742m.g I 0.670
MYB25 Arabidopsis thaliana AT2G39880 I 0.670
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.670
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I 0.669
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I 0.669
Pm002576 Prunus mume Pm002576 I 0.669
Lus10040940.g Linum usitatissimum Lus10040940.g I 0.669
cassava41257.m1 Manihot esculenta cassava41257.m1 I 0.668
29814.m000736 Ricinus communis 29814.m000736 I 0.668
Bo3g153550 Brassica oleracea Bo3g153550 I 0.667
VIT_08s0007g01540 Vitis vinifera VIT_08s0007g01540 I 0.667
PK12959.1 Cannabis sativa PK12959.1 I 0.667
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I 0.666
Cucsa.368410 Cucumis sativus Cucsa.368410 I 0.666
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I 0.666
Cla006872 Citrullus lanatus Cla006872 I 0.664
mgf018580m Mimulus guttatus mgf018580m I 0.664
SapurV1A.0262s0270 Salix purpurea SapurV1A.0262s0270 I 0.664
Lus10028979.g Linum usitatissimum Lus10028979.g I 0.663
mgf014089m Mimulus guttatus mgf014089m I 0.663
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I 0.662
GSMUA_Achr3G07700_001 Musa acuminata GSMUA_Achr3G07700_001 I 0.662
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I 0.662
MTR_6g015455 Medicago truncatula MTR_6g015455 I 0.661
30170.m013927 Ricinus communis 30170.m013927 I 0.661