Bra001378 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra001378 T267698_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G05090
M02305_2.00
Arabidopsis thaliana
NHAGATHCKNN

NNMGDATCTDN
PBM
Weirauch et al.(2014)
pTH7104
0.689 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra001378.1-P Myb 30 80

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCM_045790 Theobroma cacao TCM_045790 I 0.707
GSMUA_Achr10G12590_001 Musa acuminata GSMUA_Achr10G12590_001 I 0.705
Bostr.19424s0999 Boechera stricta Bostr.19424s0999 I 0.689
Bostr.27991s0013 Boechera stricta Bostr.27991s0013 I 0.689
Bostr.9345s0035 Boechera stricta Bostr.9345s0035 I 0.689
Bostr.13129s0456 Boechera stricta Bostr.13129s0456 I 0.689
Aquca_009_00074 Aquilegia coerulea Aquca_009_00074 I 0.689
Cagra.1504s0014 Capsella grandiflora Cagra.1504s0014 I 0.689
Carubv10003130m.g Capsella rubella Carubv10003130m.g I 0.689
Cagra.1642s0062 Capsella grandiflora Cagra.1642s0062 I 0.689
mgf014801m Mimulus guttatus mgf014801m I 0.689
Cagra.0834s0003 Capsella grandiflora Cagra.0834s0003 I 0.689
gw1.29.165.1 Physcomitrella patens gw1.29.165.1 I 0.689
Cucsa.140020 Cucumis sativus Cucsa.140020 I 0.689
cassava20582.m1 Manihot esculenta cassava20582.m1 I 0.689
30180.m001019 Ricinus communis 30180.m001019 I 0.689
Pm031149 Prunus mume Pm031149 I 0.689
Cucsa.358530 Cucumis sativus Cucsa.358530 I 0.689
EuGene.0000090108 Micromonas pusilla EuGene.0000090108 I 0.689
gw1.29.164.1 Physcomitrella patens gw1.29.164.1 I 0.689
gw1.27.80.1 Physcomitrella patens gw1.27.80.1 I 0.689
gw1.104.128.1 Physcomitrella patens gw1.104.128.1 I 0.689
Carubv10014134m.g Capsella rubella Carubv10014134m.g I 0.689
Ciclev10012203m.g Citrus clementina Ciclev10012203m.g I 0.689
SapurV1A.0159s0180 Salix purpurea SapurV1A.0159s0180 I 0.689
orange1.1g020690m.g Citrus sinensis orange1.1g020690m.g I 0.689
MDP0000846313 Malus domestica MDP0000846313 I 0.689
Lus10038996.g Linum usitatissimum Lus10038996.g I 0.689
SapurV1A.1916s0020 Salix purpurea SapurV1A.1916s0020 I 0.689
Thhalv10014387m.g Eutrema salsugineum Thhalv10014387m.g I 0.689
chr1.CM0269.130.nd Lotus japonicus chr1.CM0269.130.nd I 0.689
PK23977.1 Cannabis sativa PK23977.1 I 0.689
Thhalv10021133m.g Eutrema salsugineum Thhalv10021133m.g I 0.689
Thhalv10017945m.g Eutrema salsugineum Thhalv10017945m.g I 0.689
Lus10027291.g Linum usitatissimum Lus10027291.g I 0.689
Lus10012102.g Linum usitatissimum Lus10012102.g I 0.689
EuGene.0600010100 Micromonas sp RCC299 EuGene.0600010100 I 0.689
Eucgr.K01670 Eucalyptus grandis Eucgr.K01670 I 0.689
Eucgr.A02201 Eucalyptus grandis Eucgr.A02201 I 0.689
Cla017714 Citrullus lanatus Cla017714 I 0.689
evm.TU.supercontig_92.70 Carica papaya evm.TU.supercontig_92.70 I 0.689
gene17673-v1.0-hybrid Fragaria vesca gene17673-v1.0-hybrid I 0.689
Lus10010442.g Linum usitatissimum Lus10010442.g I 0.689
Gorai.007G351500 Gossypium raimondii Gorai.007G351500 I 0.689
Gorai.002G230800 Gossypium raimondii Gorai.002G230800 I 0.689
Carubv10024859m.g Capsella rubella Carubv10024859m.g I 0.689
Ca_07144 Cicer arietinum Ca_07144 I 0.689
GLYMA02G21820 Glycine max GLYMA02G21820 I 0.689
BRADI2G25380 Brachypodium distachyon BRADI2G25380 I 0.689
Bra034144 Brassica rapa Bra034144 I 0.689
Bra009087 Brassica rapa Bra009087 I 0.689
GLYMA03G27890 Glycine max GLYMA03G27890 I 0.689
GLYMA19G30700 Glycine max GLYMA19G30700 I 0.689
GSMUA_Achr5G27500_001 Musa acuminata GSMUA_Achr5G27500_001 I 0.689
GSMUA_Achr2G01920_001 Musa acuminata GSMUA_Achr2G01920_001 I 0.689
GSMUA_Achr11G14170_001 Musa acuminata GSMUA_Achr11G14170_001 I 0.689
GRMZM2G398055 Zea mays GRMZM2G398055 I 0.689
Bra005837 Brassica rapa Bra005837 I 0.689
Bra004593 Brassica rapa Bra004593 I 0.689
BGIOSGA018058 Oryza indica BGIOSGA018058 I 0.689
AT5G05090 Arabidopsis thaliana AT5G05090 D 0.689
AT3G10760 Arabidopsis thaliana AT3G10760 I 0.689
MYBC1 Arabidopsis thaliana AT2G40970 I 0.689
Bo3g003150 Brassica oleracea Bo3g003150 I 0.689
Bo4g012890 Brassica oleracea Bo4g012890 I 0.689
Bo9g177390 Brassica oleracea Bo9g177390 I 0.689
Bo5g137150 Brassica oleracea Bo5g137150 I 0.689
Bo5g019990 Brassica oleracea Bo5g019990 I 0.689
Cla012286 Citrullus lanatus Cla012286 I 0.689
GSMUA_Achr8G05880_001 Musa acuminata GSMUA_Achr8G05880_001 I 0.689
MYBC1 Arabidopsis lyrata scaffold_402901.1 I 0.689
scaffold_301238.1 Arabidopsis lyrata scaffold_301238.1 I 0.689
PRUPE_ppa026577mg Prunus persica PRUPE_ppa026577mg I 0.689
POPTR_0016s03240 Populus trichocarpa POPTR_0016s03240 I 0.689
scaffold_600469.1 Arabidopsis lyrata scaffold_600469.1 I 0.689
SELMODRAFT_36646 Selaginella moellendorffii SELMODRAFT_36646 I 0.689
AMTR_s00101p00128190 Amborella trichopoda AMTR_s00101p00128190 I 0.689
VIT_08s0040g00900 Vitis vinifera VIT_08s0040g00900 I 0.689
Solyc10g078310.1 Solanum lycopersicum Solyc10g078310.1 I 0.689
POPTR_0006s03340 Populus trichocarpa POPTR_0006s03340 I 0.689
PGSC0003DMG400007174 Solanum tuberosum PGSC0003DMG400007174 I 0.689
OPUNC05G14480 Oryza punctata OPUNC05G14480 I 0.689
ONIVA05G17050 Oryza nivara ONIVA05G17050 I 0.689
OMERI05G06680 Oryza meridionalis OMERI05G06680 I 0.689
LPERR05G13030 Leersia perrieri LPERR05G13030 I 0.689
ORGLA05G0141400 Oryza glaberrima ORGLA05G0141400 I 0.689
OS05G0412000 Oryza sativa OS05G0412000 I 0.689
MTR_7g089010 Medicago truncatula MTR_7g089010 I 0.689
MLOC_24056 Hordeum vulgare MLOC_24056 I 0.689
Sb09g020340 Sorghum bicolor Sb09g020340 I 0.686
Bostr.26833s0280 Boechera stricta Bostr.26833s0280 I 0.681
Bra029866 Brassica rapa Bra029866 I 0.668