Bra002042 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra002042 T267707_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATMYB65
M01076_2.00
Arabidopsis thaliana
HAACNRHHN

NDDYNGTTD
PBM
Sullivan et al.(2014)
pTH7084
0.832 0.957
ATMYB65
M07076_2.00
Arabidopsis thaliana
DHHNTAACBGHMW

WKDCVGTTANDDH
Dap-seq
OMalley et al.(2016)
MYB65_col200_a
0.832 0.957
ATMYB65
M07077_2.00
Arabidopsis thaliana
NTAACYGHMWHNDHN

NDHNDWKDCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB65_colamp_a
0.832 0.957
MYB33
M02306_2.00
Arabidopsis thaliana
HAACNRHHNN

NNDDYNGTTD
PBM
Weirauch et al.(2014)
pTH8204
0.784 0.859
MYB33
M07120_2.00
Arabidopsis thaliana
NTAACYGWHWH

DWDWCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB33_col_a
0.784 0.859
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC

GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.748 0.804
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM

KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.748 0.804
GAM1_ORYSI
M11055_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.748 0.804
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW

WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.678 0.750
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW

WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.678 0.750
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH

DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.678 0.750
Q9FR42_TOBAC
M11076_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBAS1_01
0.677 0.761
MYB101
M07051_2.00
Arabidopsis thaliana
NWHHNWAACCGWWHH

DDWWCGGTTWNDDWN
Dap-seq
OMalley et al.(2016)
MYB101_col_a
0.667 0.728
MYB101
M07052_2.00
Arabidopsis thaliana
DHHHVTAACYGWHWN

NWDWCRGTTABDDDH
Dap-seq
OMalley et al.(2016)
MYB101_colamp_a
0.667 0.728
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra002042.1-P Myb 44 91
Bra002042.1-P Myb 97 141

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo1g141040 Brassica oleracea Bo1g141040 I 0.909
ATMYB65 Arabidopsis lyrata fgenesh2_kg.3__1182__AT3G11440.1 I 0.832
ATMYB65 Arabidopsis thaliana AT3G11440 D 0.832
Carubv10013393m.g Capsella rubella Carubv10013393m.g I 0.832
Cagra.1655s0026 Capsella grandiflora Cagra.1655s0026 I 0.832
Bostr.19424s1075 Boechera stricta Bostr.19424s1075 I 0.832
Thhalv10020455m.g Eutrema salsugineum Thhalv10020455m.g I 0.826
Bra034842 Brassica rapa Bra034842 I 0.814
Bo5g136570 Brassica oleracea Bo5g136570 I 0.814
MDP0000147309 Malus domestica MDP0000147309 I 0.785
MYB33 Arabidopsis thaliana AT5G06100 D 0.784
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.769
mgf010934m Mimulus guttatus mgf010934m I 0.765
mgf019173m Mimulus guttatus mgf019173m I 0.765
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.764
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.764
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.764
29686.m000890 Ricinus communis 29686.m000890 I 0.764
Carubv10000715m.g Capsella rubella Carubv10000715m.g I 0.764
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.764
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.764
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.764
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.764
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I 0.764
TCM_044611 Theobroma cacao TCM_044611 I 0.764
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I 0.761
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I 0.761
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.759
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I 0.758
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.757
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.757
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.755
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.755
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.755
Pm016605 Prunus mume Pm016605 I 0.755
Cla013880 Citrullus lanatus Cla013880 I 0.755
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.752
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.749
OBART01G34660 Oryza barthii OBART01G34660 I 0.748
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.748
OB01G43550 Oryza brachyantha OB01G43550 I 0.748
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.748
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.748
GAM1 Oryza indica BGIOSGA004670 I 0.748
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.748
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.748
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.748
F775_28392 Aegilops tauschii F775_28392 I 0.748
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.748
GAMYB Oryza sativa OS01G0812000 I 0.748
Gam1 Hordeum vulgare Q96464_HORVU D 0.748
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.748
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.748
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.747
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.747
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.746
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.746
mgf002965m Mimulus guttatus mgf002965m I 0.743
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.742
Si000907m.g Setaria italica Si000907m.g I 0.739
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.738
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.738
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.738
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.737
Ca_25013 Cicer arietinum Ca_25013 I 0.737
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.734
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.734
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.733
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.733
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.733
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.733
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.732
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.732
MTR_3g011610 Medicago truncatula MTR_3g011610 I 0.729
MTR_3g052430 Medicago truncatula MTR_3g052430 I 0.728
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.728
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.725
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.725
Ca_20081 Cicer arietinum Ca_20081 I 0.724
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.724
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.724
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.724
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.724
mgf025568m Mimulus guttatus mgf025568m I 0.724
Sb03g037680 Sorghum bicolor Sb03g037680 I 0.722
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.722
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.722
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I 0.722
Ca_21739 Cicer arietinum Ca_21739 I 0.721
29785.m000932 Ricinus communis 29785.m000932 I 0.719
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.719
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.718
PK15478.1 Cannabis sativa PK15478.1 I 0.716
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.716
Pm015094 Prunus mume Pm015094 I 0.716
Cla007782 Citrullus lanatus Cla007782 I 0.716
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.715
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.715
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I 0.715
Lus10027189.g Linum usitatissimum Lus10027189.g I 0.712
Lus10035275.g Linum usitatissimum Lus10035275.g I 0.712
GLYMA08G42955 Glycine max GLYMA08G42955 I 0.712
Bo3g021790 Brassica oleracea Bo3g021790 I 0.711
Bra028997 Brassica rapa Bra028997 I 0.711
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I 0.711
GLYMA08G42920 Glycine max GLYMA08G42920 I 0.710
LjSGA_026914.2 Lotus japonicus LjSGA_026914.2 I 0.708
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.706
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I 0.706
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I 0.704
PDK_20s1383724g001 Phoenix dactylifera PDK_20s1383724g001 I 0.704
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.703
Cla005406 Citrullus lanatus Cla005406 I 0.703
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.703
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.703
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.702
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.702
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.702
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.702
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.702
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.702
Bra002938 Brassica rapa Bra002938 I 0.702
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.701
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.701
MDP0000175835 Malus domestica MDP0000175835 I 0.700
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.699
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.699
MTR_3g052450 Medicago truncatula MTR_3g052450 I 0.699
Bo4g046000 Brassica oleracea Bo4g046000 I 0.697
MDP0000151688 Malus domestica MDP0000151688 I 0.697
Bra005597 Brassica rapa Bra005597 I 0.697
MDP0000176798 Malus domestica MDP0000176798 I 0.697
mgf020500m Mimulus guttatus mgf020500m I 0.697
Solyc11g072060.1 Solanum lycopersicum Solyc11g072060.1 I 0.697
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I 0.696
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.696
PGSC0003DMG400027418 Solanum tuberosum PGSC0003DMG400027418 I 0.696
Bo9g119060 Brassica oleracea Bo9g119060 I 0.696
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.694
TCM_041010 Theobroma cacao TCM_041010 I 0.694
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.690
GLYMA12G31950 Glycine max GLYMA12G31950 I 0.690
OLONG_019401 Oryza longistaminata OLONG_019401 I 0.688
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.687
MDP0000179306 Malus domestica MDP0000179306 I 0.687
Ca_07119 Cicer arietinum Ca_07119 I 0.684
Pavir.Ib03827 Panicum virgatum Pavir.Ib03827 I 0.684
Si039629m.g Setaria italica Si039629m.g I 0.684
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I 0.683
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I 0.679
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I 0.679
ORUFI05G22370 Oryza rufipogon ORUFI05G22370 I 0.678
ONIVA05G21800 Oryza nivara ONIVA05G21800 I 0.678
OPUNC05G18800 Oryza punctata OPUNC05G18800 I 0.678
OS05G0490600 Oryza sativa OS05G0490600 I 0.678
BGIOSGA017818 Oryza indica BGIOSGA017818 I 0.678
OBART05G21120 Oryza barthii OBART05G21120 I 0.678
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.678
myb.Ph3 Petunia x hybrida Q02994_PETHY D 0.678
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.678
OGLUM05G22330 Oryza glumaepatula OGLUM05G22330 I 0.678
Eucgr.A01122 Eucalyptus grandis Eucgr.A01122 I 0.677
MYB97 Arabidopsis thaliana AT4G26930 I 0.677
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D 0.677
MYB97 Arabidopsis lyrata fgenesh2_kg.7__1539__AT4G26930.1 I 0.677
Bra012038 Brassica rapa Bra012038 I 0.676
Thhalv10025350m.g Eutrema salsugineum Thhalv10025350m.g I 0.676
MTR_1g021230 Medicago truncatula MTR_1g021230 I 0.675
LPERR03G20110 Leersia perrieri LPERR03G20110 I 0.674
LPERR05G16930 Leersia perrieri LPERR05G16930 I 0.673
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.673
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.673
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.673
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I 0.673
Ca_15422 Cicer arietinum Ca_15422 I 0.672
TCM_030853 Theobroma cacao TCM_030853 I 0.672
Gorai.002G089900 Gossypium raimondii Gorai.002G089900 I 0.672
TRIUR3_17275 Triticum urartu TRIUR3_17275 I 0.671
Traes_1BL_CF98E922B Triticum aestivum Traes_1BL_CF98E922B I 0.671
MYB101 Populus trichocarpa POPTR_0002s21300 I 0.670
MLOC_6041 Hordeum vulgare MLOC_6041 I 0.670
TRIUR3_15006 Triticum urartu TRIUR3_15006 I 0.670
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I 0.670
29823.m000215 Ricinus communis 29823.m000215 I 0.668
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I 0.668
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I 0.667
Bo4g076940 Brassica oleracea Bo4g076940 I 0.667
Ca_06236 Cicer arietinum Ca_06236 I 0.667
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I 0.667
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I 0.667
MYB101 Arabidopsis thaliana AT2G32460 D 0.667
Bra021791 Brassica rapa Bra021791 I 0.667
GRMZM2G028054 Zea mays GRMZM2G028054 I 0.667
TCM_011907 Theobroma cacao TCM_011907 I 0.667
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I 0.667
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I 0.667
Carubv10025227m.g Capsella rubella Carubv10025227m.g I 0.667
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I 0.667
Bo3g026690 Brassica oleracea Bo3g026690 I 0.667
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I 0.667
Bo4g178040 Brassica oleracea Bo4g178040 I 0.666
F775_23034 Aegilops tauschii F775_23034 I 0.666
TRIUR3_20797 Triticum urartu TRIUR3_20797 I 0.666
MTR_2g088170 Medicago truncatula MTR_2g088170 I 0.665
OMERI06G21070 Oryza meridionalis OMERI06G21070 I 0.664
OPUNC06G18670 Oryza punctata OPUNC06G18670 I 0.664
OBART06G20450 Oryza barthii OBART06G20450 I 0.664
OGLUM06G21530 Oryza glumaepatula OGLUM06G21530 I 0.664
ONIVA06G24230 Oryza nivara ONIVA06G24230 I 0.664
ORUFI06G21880 Oryza rufipogon ORUFI06G21880 I 0.664
ORGLA06G0168900 Oryza glaberrima ORGLA06G0168900 I 0.664
Traes_7DL_FAF2AE9FB Triticum aestivum Traes_7DL_FAF2AE9FB I 0.663
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.663
F775_00954 Aegilops tauschii F775_00954 I 0.663
GLYMA13G04031 Glycine max GLYMA13G04031 I 0.663
GSMUA_Achr7G00280_001 Musa acuminata GSMUA_Achr7G00280_001 I 0.663
TRIUR3_17146 Triticum urartu TRIUR3_17146 I 0.663
Traes_7AL_0AD4A7A87 Triticum aestivum Traes_7AL_0AD4A7A87 I 0.663
MDP0000308617 Malus domestica MDP0000308617 I 0.663
GSMUA_Achr10G29280_001 Musa acuminata GSMUA_Achr10G29280_001 I 0.662