Bra004076 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra004076 T267733_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARR11
M00872_2.00
Arabidopsis thaliana
NRATHHNNN

NNNDDATYN
PBM
Franco-Zorrilla et al.(2014)
ARR11
0.857 0.957
PK07924.1
M01278_2.00
Cannabis sativa
NGATHYNNN

NNNRDATCN
PBM
Lambert et al.(2019)
pTH11431
0.786 0.915
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004076.1-P Myb 190 241

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_040_00102 Aquilegia coerulea Aquca_040_00102 N 0.000
CMTA4 Arabidopsis thaliana AT1G67310 N 0.000
Bo2g055720 Brassica oleracea Bo2g055720 N 0.000
Bo6g099030 Brassica oleracea Bo6g099030 N 0.000
Bo6g103720 Brassica oleracea Bo6g103720 N 0.000
Bra004096 Brassica rapa Bra004096 N 0.000
Bra004217 Brassica rapa Bra004217 N 0.000
Bra034007 Brassica rapa Bra034007 N 0.000
Carubv10022369m.g Capsella rubella Carubv10022369m.g N 0.000
cassava42936.valid.m1 Manihot esculenta cassava42936.valid.m1 N 0.000
cassava6546.valid.m1 Manihot esculenta cassava6546.valid.m1 N 0.000
Ca_08511 Cicer arietinum Ca_08511 N 0.000
Ciclev10030636m.g Citrus clementina Ciclev10030636m.g N 0.000
Cla000701 Citrullus lanatus Cla000701 N 0.000
Cucsa.349690 Cucumis sativus Cucsa.349690 N 0.000
Eucgr.H04623 Eucalyptus grandis Eucgr.H04623 N 0.000
evm.TU.supercontig_43.77 Carica papaya evm.TU.supercontig_43.77 N 0.000
fgenesh1_pm.C_scaffold_2000778 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000778 N 0.000
GLYMA05G28090 Glycine max GLYMA05G28090 N 0.000
Gorai.009G332200 Gossypium raimondii Gorai.009G332200 N 0.000
MDP0000262800 Malus domestica MDP0000262800 N 0.000
mgf025436m Mimulus guttatus mgf025436m N 0.000
MTR_8g080800 Medicago truncatula MTR_8g080800 N 0.000
orange1.1g044976m.g Citrus sinensis orange1.1g044976m.g N 0.000
PK06349.1 Cannabis sativa PK06349.1 N 0.000
Pm007031 Prunus mume Pm007031 N 0.000
POPTR_0001s13700 Populus trichocarpa POPTR_0001s13700 N 0.000
POPTR_0003s16910 Populus trichocarpa POPTR_0003s16910 N 0.000
PRUPE_ppa000516mg Prunus persica PRUPE_ppa000516mg N 0.000
SapurV1A.1172s0010 Salix purpurea SapurV1A.1172s0010 N 0.000
SapurV1A.1460s0040 Salix purpurea SapurV1A.1460s0040 N 0.000
Solyc05g015650.2 Solanum lycopersicum Solyc05g015650.2 N 0.000
Solyc12g035520.1 Solanum lycopersicum Solyc12g035520.1 N 0.000
TCM_008731 Theobroma cacao TCM_008731 N 0.000
Thhalv10018053m.g Eutrema salsugineum Thhalv10018053m.g N 0.000
VIT_01s0010g03850 Vitis vinifera VIT_01s0010g03850 N 0.000