Bra004394 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra004394 T267740_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW

WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.896 0.968
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH

DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.896 0.968
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH

DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.760 0.817
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD

HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.760 0.817
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN

NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.719 0.753
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD

HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.719 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004394.1-P Myb 103 149
Bra004394.1-P Myb 155 200

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

382 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R015690 Calypte anna Aan_R015690 N 0.000
Afo_R011128 Aptenodytes forsteri Afo_R011128 N 0.000
Alligator_sinensis_CCG000339.1 Alligator sinensis Alligator_sinensis_CCG000339.1 N 0.000
Brh_R004704 Buceros rhinoceros Brh_R004704 N 0.000
Cmyd_10009540 Chelonia mydas Cmyd_10009540 N 0.000
PLAGL2 Anolis carolinensis ENSACAG00000008743 N 0.000
ENSAPLG00000005061 Anas platyrhynchos ENSAPLG00000005061 N 0.000
ENSFALG00000005449 Ficedula albicollis ENSFALG00000005449 N 0.000
PLAGL2 Gallus gallus ENSGALG00000006586 N 0.000
ENSGMOG00000018396 Gadus morhua ENSGMOG00000018396 N 0.000
ENSMEUG00000001198 Macropus eugenii ENSMEUG00000001198 N 0.000
ENSMEUG00000015507 Macropus eugenii ENSMEUG00000015507 N 0.000
PLAGL2 Meleagris gallopavo ENSMGAG00000007476 N 0.000
PLAGL1 Monodelphis domestica ENSMODG00000017250 N 0.000
PLAGL2 Monodelphis domestica ENSMODG00000019464 N 0.000
ENSPSIG00000004000 Pelodiscus sinensis ENSPSIG00000004000 N 0.000
ENSSHAG00000011174 Sarcophilus harrisii ENSSHAG00000011174 N 0.000
ENSSHAG00000015101 Sarcophilus harrisii ENSSHAG00000015101 N 0.000
PLAGL2 Taeniopygia guttata ENSTGUG00000006525 N 0.000
Gfo_R005319 Geospiza fortis Gfo_R005319 N 0.000
Pvit_11206 Pogona vitticeps Pvit_11206 N 0.000
Tal_R000481 Tyto alba Tal_R000481 N 0.000