Bra004539 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra004539 T267746_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004539.1-P Myb 26 70

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo4g009260 Brassica oleracea Bo4g009260 N 0.909
Bo4g197120 Brassica oleracea Bo4g197120 N 0.909
Cagra.0050s0058 Capsella grandiflora Cagra.0050s0058 N 0.909
Carubv10024406m.g Capsella rubella Carubv10024406m.g N 0.909
Bostr.25993s0128 Boechera stricta Bostr.25993s0128 N 0.909
Bo3g039260 Brassica oleracea Bo3g039260 N 0.909
CPC Arabidopsis thaliana AT2G46410 N 0.909
Thhalv10001695m.g Eutrema salsugineum Thhalv10001695m.g N 0.909
Bra039283 Brassica rapa Bra039283 N 0.888
Carubv10018233m.g Capsella rubella Carubv10018233m.g N 0.819
Aquca_013_00134 Aquilegia coerulea Aquca_013_00134 N 0.809
VIT_16s0050g02530 Vitis vinifera VIT_16s0050g02530 N 0.801
Eucgr.D02360 Eucalyptus grandis Eucgr.D02360 N 0.801
CPC Arabidopsis lyrata Al_scaffold_0005_3105 N 0.797
Cagra.0483s0079 Capsella grandiflora Cagra.0483s0079 N 0.797
Bostr.13158s0169 Boechera stricta Bostr.13158s0169 N 0.797
TRY Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001350 N 0.795
Cagra.0084s0067 Capsella grandiflora Cagra.0084s0067 N 0.795
Bostr.26833s0960 Boechera stricta Bostr.26833s0960 N 0.795
Thhalv10015741m.g Eutrema salsugineum Thhalv10015741m.g N 0.795
Bo3g022870 Brassica oleracea Bo3g022870 N 0.795
Carubv10027412m.g Capsella rubella Carubv10027412m.g N 0.795
TRY Arabidopsis thaliana AT5G53200 N 0.795
GSMUA_Achr8G19880_001 Musa acuminata GSMUA_Achr8G19880_001 N 0.781
GSMUA_AchrUn_randomG19730_001 Musa acuminata GSMUA_AchrUn_randomG19730_001 N 0.781
MDP0000141474 Malus domestica MDP0000141474 N 0.777
PRUPE_ppa023853mg Prunus persica PRUPE_ppa023853mg N 0.777
Pm018400 Prunus mume Pm018400 N 0.777
Bo9g110930 Brassica oleracea Bo9g110930 N 0.774
MDP0000583070 Malus domestica MDP0000583070 N 0.768
gene19217-v1.0-hybrid Fragaria vesca gene19217-v1.0-hybrid N 0.768
GSMUA_Achr1G05080_001 Musa acuminata GSMUA_Achr1G05080_001 N 0.760
POPTR_0002s17030 Populus trichocarpa POPTR_0002s17030 N 0.758
SapurV1A.0013s0580 Salix purpurea SapurV1A.0013s0580 N 0.756
cassava32987.m1 Manihot esculenta cassava32987.m1 N 0.755
orange1.1g034546m.g Citrus sinensis orange1.1g034546m.g N 0.755
Gorai.007G107400 Gossypium raimondii Gorai.007G107400 N 0.755
Ca_15029 Cicer arietinum Ca_15029 N 0.755
Eucgr.E00069 Eucalyptus grandis Eucgr.E00069 N 0.755
Ciclev10024111m.g Citrus clementina Ciclev10024111m.g N 0.755
TCM_005177 Theobroma cacao TCM_005177 N 0.755
MTR_5g009460 Medicago truncatula MTR_5g009460 N 0.755
Aquca_037_00095 Aquilegia coerulea Aquca_037_00095 N 0.753
SapurV1A.2893s0010 Salix purpurea SapurV1A.2893s0010 N 0.749
SapurV1A.0190s0070 Salix purpurea SapurV1A.0190s0070 N 0.749
SapurV1A.2295s0020 Salix purpurea SapurV1A.2295s0020 N 0.749
Cucsa.201970 Cucumis sativus Cucsa.201970 N 0.749
Bra022637 Brassica rapa Bra022637 N 0.747
Bo2g046050 Brassica oleracea Bo2g046050 N 0.743
Ciclev10006315m.g Citrus clementina Ciclev10006315m.g N 0.740
GLYMA01G43435 Glycine max GLYMA01G43435 N 0.739
TCM_016428 Theobroma cacao TCM_016428 N 0.737
POPTR_0014s09200 Populus trichocarpa POPTR_0014s09200 N 0.735
Thhalv10029104m.g Eutrema salsugineum Thhalv10029104m.g N 0.735
VIT_15s0046g01130 Vitis vinifera VIT_15s0046g01130 N 0.734
Lus10005949.g Linum usitatissimum Lus10005949.g N 0.733
GLYMA11G02061 Glycine max GLYMA11G02061 N 0.728
cassava46504.m1 Manihot esculenta cassava46504.m1 N 0.720
Gorai.001G155700 Gossypium raimondii Gorai.001G155700 N 0.719
GSMUA_Achr3G25090_001 Musa acuminata GSMUA_Achr3G25090_001 N 0.714
Eucgr.E00851 Eucalyptus grandis Eucgr.E00851 N 0.714
Bostr.7365s0058 Boechera stricta Bostr.7365s0058 N 0.713
evm.TU.supercontig_3.55 Carica papaya evm.TU.supercontig_3.55 N 0.706
29742.m001447 Ricinus communis 29742.m001447 N 0.703
cassava10382.m1 Manihot esculenta cassava10382.m1 N 0.703
Solyc01g095640.1 Solanum lycopersicum Solyc01g095640.1 N 0.701
PGSC0003DMG400000212 Solanum tuberosum PGSC0003DMG400000212 N 0.701
Cagra.1372s0017 Capsella grandiflora Cagra.1372s0017 N 0.700
Carubv10003403m.g Capsella rubella Carubv10003403m.g N 0.700
evm.TU.contig_29502 Carica papaya evm.TU.contig_29502 N 0.696
PDK_20s1335581g001 Phoenix dactylifera PDK_20s1335581g001 N 0.695
PDK_20s1307674g001 Phoenix dactylifera PDK_20s1307674g001 N 0.695
Bra000941 Brassica rapa Bra000941 N 0.694
Bo3g054440 Brassica oleracea Bo3g054440 N 0.694
MDP0000718806 Malus domestica MDP0000718806 N 0.690
MDP0000547418 Malus domestica MDP0000547418 N 0.690
Pm019781 Prunus mume Pm019781 N 0.690
PRUPE_ppa024794mg Prunus persica PRUPE_ppa024794mg N 0.688
Bra026297 Brassica rapa Bra026297 N 0.687
Aquca_028_00182 Aquilegia coerulea Aquca_028_00182 N 0.684
ETC3 Arabidopsis thaliana AT4G01060 N 0.679
ETC3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002892 N 0.673
Bra008539 Brassica rapa Bra008539 N 0.673
Bo2g098940 Brassica oleracea Bo2g098940 N 0.673
SapurV1A.1227s0050 Salix purpurea SapurV1A.1227s0050 N 0.672
SapurV1A.0346s0010 Salix purpurea SapurV1A.0346s0010 N 0.672
SapurV1A.0377s0050 Salix purpurea SapurV1A.0377s0050 N 0.672
POPTR_0012s01420 Populus trichocarpa POPTR_0012s01420 N 0.672
Lus10038822.g Linum usitatissimum Lus10038822.g N 0.672
Al_scaffold_0136_3 Arabidopsis lyrata Al_scaffold_0136_3 N 0.671
Cagra.0567s0009 Capsella grandiflora Cagra.0567s0009 N 0.671
Cla011563 Citrullus lanatus Cla011563 N 0.669
Lus10014933.g Linum usitatissimum Lus10014933.g N 0.666
Carubv10025583m.g Capsella rubella Carubv10025583m.g N 0.663