Bra006249 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra006249 T267771_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AtMYB40
M07126_2.00
Arabidopsis thaliana
YYYACCWAMYHHH

DDDRKTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB40_col_a
0.880 0.978
MYB43
M07127_2.00
Arabidopsis thaliana
NYYYACCWAMYWH

DWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB43_col_a
0.683 0.750
PK21166.1
M01281_2.00
Cannabis sativa
HACCWAMY

RKTWGGTD
PBM
Lambert et al.(2019)
pTH11255
0.677 0.761
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra006249.1-P Myb 14 61
Bra006249.1-P Myb 67 111

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo3g009730 Brassica oleracea Bo3g009730 I 0.909
Bra008764 Brassica rapa Bra008764 I 0.900
Bo9g166000 Brassica oleracea Bo9g166000 I 0.891
Bostr.2902s0170 Boechera stricta Bostr.2902s0170 I 0.880
Cagra.3166s0041 Capsella grandiflora Cagra.3166s0041 I 0.880
Thhalv10014425m.g Eutrema salsugineum Thhalv10014425m.g I 0.880
AtMYB40 Arabidopsis thaliana AT5G14340 D 0.880
Bo4g101470 Brassica oleracea Bo4g101470 I 0.827
PGSC0003DMG400011976 Solanum tuberosum PGSC0003DMG400011976 I 0.809
GLYMA19G07830 Glycine max GLYMA19G07830 I 0.801
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.794
GLYMA05G06410 Glycine max GLYMA05G06410 I 0.792
GLYMA16G06900 Glycine max GLYMA16G06900 I 0.787
Eucgr.I01698 Eucalyptus grandis Eucgr.I01698 I 0.784
Solyc05g014290.2 Solanum lycopersicum Solyc05g014290.2 I 0.784
MDP0000303239 Malus domestica MDP0000303239 I 0.783
MDP0000241111 Malus domestica MDP0000241111 I 0.783
Ca_19393 Cicer arietinum Ca_19393 I 0.782
evm.TU.supercontig_1097.3 Carica papaya evm.TU.supercontig_1097.3 I 0.780
cassava3745.m1 Manihot esculenta cassava3745.m1 I 0.780
POPTR_0001s36220 Populus trichocarpa POPTR_0001s36220 I 0.776
Lus10032117.g Linum usitatissimum Lus10032117.g I 0.773
Pm015564 Prunus mume Pm015564 I 0.772
TCM_017051 Theobroma cacao TCM_017051 I 0.772
PRUPE_ppa026877mg Prunus persica PRUPE_ppa026877mg I 0.772
Gorai.006G037500 Gossypium raimondii Gorai.006G037500 I 0.772
gene28021-v1.0-hybrid Fragaria vesca gene28021-v1.0-hybrid I 0.772
cassava17364.m1 Manihot esculenta cassava17364.m1 I 0.772
Eucgr.J02279 Eucalyptus grandis Eucgr.J02279 I 0.769
Gorai.007G074500 Gossypium raimondii Gorai.007G074500 I 0.767
mgf018940m Mimulus guttatus mgf018940m I 0.764
AtMYB40 Vitis vinifera VIT_14s0219g00050 I 0.764
Ciclev10017764m.g Citrus clementina Ciclev10017764m.g I 0.761
Aquca_011_00323 Aquilegia coerulea Aquca_011_00323 I 0.759
Lus10014569.g Linum usitatissimum Lus10014569.g I 0.753
Cla004104 Citrullus lanatus Cla004104 I 0.751
Cucsa.156340 Cucumis sativus Cucsa.156340 I 0.751
SapurV1A.0136s0070 Salix purpurea SapurV1A.0136s0070 I 0.750
Solyc02g093740.2 Solanum lycopersicum Solyc02g093740.2 I 0.746
PGSC0003DMG400012648 Solanum tuberosum PGSC0003DMG400012648 I 0.746
29929.m004749 Ricinus communis 29929.m004749 I 0.741
cassava15064.m1 Manihot esculenta cassava15064.m1 I 0.721
GSMUA_Achr6G06800_001 Musa acuminata GSMUA_Achr6G06800_001 I 0.701
Aquca_011_00322 Aquilegia coerulea Aquca_011_00322 I 0.697
GSMUA_Achr9G15640_001 Musa acuminata GSMUA_Achr9G15640_001 I 0.690
Solyc04g014470.2 Solanum lycopersicum Solyc04g014470.2 I 0.689
Solyc11g011050.1 Solanum lycopersicum Solyc11g011050.1 I 0.689
PGSC0003DMG400015668 Solanum tuberosum PGSC0003DMG400015668 I 0.689
MYB43 Arabidopsis lyrata scaffold_601700.1 I 0.683
Carubv10001378m.g Capsella rubella Carubv10001378m.g I 0.683
MYB43 Arabidopsis thaliana AT5G16600 D 0.683
Cagra.0434s0026 Capsella grandiflora Cagra.0434s0026 I 0.683
Bostr.2902s0397 Boechera stricta Bostr.2902s0397 I 0.683
Bra004155 Brassica rapa Bra004155 I 0.680
Bo6g099800 Brassica oleracea Bo6g099800 I 0.680
Cagra.1300s0004 Capsella grandiflora Cagra.1300s0004 I 0.680
Carubv10020766m.g Capsella rubella Carubv10020766m.g I 0.680
Bostr.26959s0295 Boechera stricta Bostr.26959s0295 I 0.680
GSMUA_AchrUn_randomG11880_001 Musa acuminata GSMUA_AchrUn_randomG11880_001 N 0.678
mgf025004m Mimulus guttatus mgf025004m I 0.678
GSMUA_Achr5G23110_001 Musa acuminata GSMUA_Achr5G23110_001 I 0.677
PK21166.1 Cannabis sativa PK21166.1 D 0.677
gene30520-v1.0-hybrid Fragaria vesca gene30520-v1.0-hybrid I 0.677
GRMZM2G106558 Zea mays GRMZM2G106558 I 0.677
Pavir.Fb01563 Panicum virgatum Pavir.Fb01563 I 0.677
Thhalv10019852m.g Eutrema salsugineum Thhalv10019852m.g I 0.677
Cucsa.375180 Cucumis sativus Cucsa.375180 I 0.677
MYB20 Arabidopsis lyrata scaffold_201335.1 I 0.677
MYB43 Vitis vinifera VIT_14s0006g00450 I 0.677
MYB20 Arabidopsis thaliana AT1G66230 I 0.672
Bo2g013190 Brassica oleracea Bo2g013190 I 0.670
Si014144m.g Setaria italica Si014144m.g I 0.668
AMTR_s00049p00074250 Amborella trichopoda AMTR_s00049p00074250 I 0.668
BGIOSGA028709 Oryza indica BGIOSGA028709 I 0.666
Thhalv10014086m.g Eutrema salsugineum Thhalv10014086m.g I 0.666
F775_13107 Aegilops tauschii F775_13107 I 0.666
ORGLA08G0134400 Oryza glaberrima ORGLA08G0134400 I 0.666
OPUNC08G12780 Oryza punctata OPUNC08G12780 I 0.666
Traes_5DL_46D39C394 Triticum aestivum Traes_5DL_46D39C394 I 0.666
Traes_5BL_D85C0EF26 Triticum aestivum Traes_5BL_D85C0EF26 I 0.666
Bo9g163020 Brassica oleracea Bo9g163020 I 0.666
OB08G22860 Oryza brachyantha OB08G22860 I 0.666
Lus10004042.g Linum usitatissimum Lus10004042.g I 0.664
AtMYB40 Populus trichocarpa POPTR_0008s18110 I 0.664
SapurV1A.0206s0260 Salix purpurea SapurV1A.0206s0260 I 0.661