Bra006370 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra006370 T267773_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH

DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.833 0.892
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH

DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.833 0.892
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY

RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.750 0.806
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH

DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.750 0.806
MYB106
M11040_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.742 0.753
AtMYB93
M07020_2.00
Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH

DDDDDDDDRKTWGKTRRRNHD
Dap-seq
OMalley et al.(2016)
MYB93_col_a
0.724 0.796
AtMYB93
M07021_2.00
Arabidopsis thaliana
NNHNBYYYAMCWAMY

RKTWGKTRRRVNDNN
Dap-seq
OMalley et al.(2016)
MYB93_colamp_a
0.724 0.796
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH

DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.720 0.731
MYB58
M07005_2.00
Arabidopsis thaliana
NNYYYACCWAMCHHH

DDDGKTWGGTRRRNN
Dap-seq
OMalley et al.(2016)
MYB58_col_a
0.700 0.742
MYB58
M07006_2.00
Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH

DNNNNDDDGKTWGGTRDRNND
Dap-seq
OMalley et al.(2016)
MYB58_colamp_a
0.700 0.742
AtMYB10
M07081_2.00
Arabidopsis thaliana
YYYACCWAMCHHHHNH

DNDDDDGKTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB10_col_a
0.688 0.720
AtMYB10
M07082_2.00
Arabidopsis thaliana
NYYYACCWAMCHHH

DDDGKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB10_colamp_a
0.688 0.720
MYB49
M07140_2.00
Arabidopsis thaliana
HDBBYYACCWAMYWH

DWRKTWGGTRRVVHD
Dap-seq
OMalley et al.(2016)
MYB49_col_a
0.675 0.774
MYB49
M07141_2.00
Arabidopsis thaliana
NYYYACCTAMYWHN

NDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB49_colamp_a
0.675 0.774
PK28187.1
M01286_2.00
Cannabis sativa
TACCTACC

GGTAGGTA
PBM
Lambert et al.(2019)
pTH11305
0.666 0.796
ATMYB13
M06999_2.00
Arabidopsis thaliana
HYCACCWACCHHHNH

DNDDDGGTWGGTGRD
Dap-seq
OMalley et al.(2016)
MYB13_col_a
0.665 0.731
ATMYB13
M07000_2.00
Arabidopsis thaliana
BYCACCWACCHHHNNHNN

NNDNNDDDGGTWGGTGRV
Dap-seq
OMalley et al.(2016)
MYB13_colamp_a
0.665 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra006370.1-P Myb 14 61
Bra006370.1-P Myb 67 112

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

818 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29838.m001724 Ricinus communis 29838.m001724 I 0.000
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I 0.000
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I 0.000
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I 0.000
BGIOSGA007539 Oryza indica BGIOSGA007539 I 0.000
BGIOSGA020596 Oryza indica BGIOSGA020596 I 0.000
Bo1g039000 Brassica oleracea Bo1g039000 I 0.000
Bo1g108240 Brassica oleracea Bo1g108240 I 0.000
Bo3g181450 Brassica oleracea Bo3g181450 I 0.000
Bo5g103560 Brassica oleracea Bo5g103560 I 0.000
Bostr.26675s0048 Boechera stricta Bostr.26675s0048 I 0.000
Bra013805 Brassica rapa Bra013805 I 0.000
Bra014292 Brassica rapa Bra014292 I 0.000
Bra023900 Brassica rapa Bra023900 I 0.000
Bra031258 Brassica rapa Bra031258 I 0.000
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I 0.000
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I 0.000
Cagra.2171s0014 Capsella grandiflora Cagra.2171s0014 I 0.000
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I 0.000
Carubv10006355m.g Capsella rubella Carubv10006355m.g I 0.000
Carubv10009866m.g Capsella rubella Carubv10009866m.g I 0.000
Carubv10016131m.g Capsella rubella Carubv10016131m.g I 0.000
cassava12169.valid.m1 Manihot esculenta cassava12169.valid.m1 I 0.000
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I 0.000
Ca_01471 Cicer arietinum Ca_01471 I 0.000
Ca_17522 Cicer arietinum Ca_17522 I 0.000
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I 0.000
Cla013127 Citrullus lanatus Cla013127 I 0.000
Cla015736 Citrullus lanatus Cla015736 I 0.000
Cucsa.218190 Cucumis sativus Cucsa.218190 I 0.000
Cucsa.359570 Cucumis sativus Cucsa.359570 I 0.000
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I 0.000
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I 0.000
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I 0.000
F775_08559 Aegilops tauschii F775_08559 I 0.000
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I 0.000
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I 0.000
GATA17 Oryza sativa OS02G0148500 I 0.000
GATA24 Arabidopsis thaliana AT3G21175 D 0.000
GATA28 Arabidopsis thaliana AT1G51600 D 0.000
GLYMA08G23720 Glycine max GLYMA08G23720 I 0.000
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I 0.000
GRMZM2G058479 Zea mays GRMZM2G058479 I 0.000
GRMZM2G080509 Zea mays GRMZM2G080509 I 0.000
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I 0.000
GSMUA_Achr2G04520_001 Musa acuminata GSMUA_Achr2G04520_001 I 0.000
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I 0.000
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I 0.000
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I 0.000
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I 0.000
LjSGA_067759.1 Lotus japonicus LjSGA_067759.1 I 0.000
LPERR02G03330 Leersia perrieri LPERR02G03330 I 0.000
LPERR06G21800 Leersia perrieri LPERR06G21800 I 0.000
LPERR11G14110 Leersia perrieri LPERR11G14110 I 0.000
mgf016112m Mimulus guttatus mgf016112m I 0.000
MLOC_17061 Hordeum vulgare MLOC_17061 I 0.000
MLOC_3107 Hordeum vulgare MLOC_3107 I 0.000
MTR_3g100050 Medicago truncatula MTR_3g100050 I 0.000
OB02G13220 Oryza brachyantha OB02G13220 I 0.000
OB06G33840 Oryza brachyantha OB06G33840 I 0.000
OBART02G03780 Oryza barthii OBART02G03780 I 0.000
OBART06G26250 Oryza barthii OBART06G26250 I 0.000
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I 0.000
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I 0.000
OLONG_015069 Oryza longistaminata OLONG_015069 I 0.000
OMERI02G04610 Oryza meridionalis OMERI02G04610 I 0.000
OMERI06G26410 Oryza meridionalis OMERI06G26410 I 0.000
ONIVA02G03810 Oryza nivara ONIVA02G03810 I 0.000
ONIVA06G28780 Oryza nivara ONIVA06G28780 I 0.000
OPUNC02G02970 Oryza punctata OPUNC02G02970 I 0.000
OPUNC06G23830 Oryza punctata OPUNC06G23830 I 0.000
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I 0.000
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I 0.000
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I 0.000
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I 0.000
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I 0.000
OS06G0698900 Oryza sativa OS06G0698900 D 0.000
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I 0.000
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I 0.000
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I 0.000
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I 0.000
Pm013048 Prunus mume Pm013048 I 0.000
Pm022163 Prunus mume Pm022163 I 0.000
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I 0.000
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I 0.000
POPTR_0017s06980 Populus trichocarpa POPTR_0017s06980 I 0.000
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I 0.000
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I 0.000
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I 0.000
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I 0.000
Sb10g028750 Sorghum bicolor Sb10g028750 I 0.000
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I 0.000
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I 0.000
Si006750m.g Setaria italica Si006750m.g I 0.000
TCM_007360 Theobroma cacao TCM_007360 I 0.000
TCM_027858 Theobroma cacao TCM_027858 I 0.000
Thhalv10011695m.g Eutrema salsugineum Thhalv10011695m.g I 0.000
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I 0.000
Thhalv10025795m.g Eutrema salsugineum Thhalv10025795m.g I 0.000
TIFY1 Arabidopsis lyrata fgenesh2_kg.7__1832__AT4G24470.2 I 0.000
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I 0.000
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I 0.000
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I 0.000
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I 0.000
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I 0.000
TRIUR3_11107 Triticum urartu TRIUR3_11107 I 0.000
TRIUR3_32095 Triticum urartu TRIUR3_32095 I 0.000
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I 0.000
ZIM Arabidopsis thaliana AT4G24470 D 0.000
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I 0.000
ZML2 Arabidopsis lyrata scaffold_104929.1 I 0.000