Bra008411 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra008411 T267795_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G24120
M00729_2.00
Arabidopsis thaliana
NNKATDCBNN

NNVGHATMNN
PBM
Chang et al.(2013)
pTH7086
0.816 0.915
UNE16
M01270_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Lambert et al.(2019)
pTH9967
0.816 0.915
AT3G24120
M07085_2.00
Arabidopsis thaliana
HAKATTCB

VGAATMTD
Dap-seq
OMalley et al.(2016)
At3g24120_col_a
0.816 0.915
AT3G24120
M07086_2.00
Arabidopsis thaliana
NDRAAKATTCBHHN

NDDVGAATMTTYHN
Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a
0.816 0.915
PHL12
M01077_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Sullivan et al.(2014)
pTH7098
0.774 0.915
PHL12
M07079_2.00
Arabidopsis thaliana
RGAATATTCYYTWN

NWARRGAATATTCY
Dap-seq
OMalley et al.(2016)
At3g12730_col_a
0.774 0.915
PHL12
M07080_2.00
Arabidopsis thaliana
NNRAAKATTCBHHN

NDDVGAATMTTYNN
Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a
0.774 0.915
MYR1
M02309_2.00
Arabidopsis thaliana
NKATNCBNNN

NNNVGNATMN
PBM
Weirauch et al.(2014)
pTH8859
0.772 0.809
MYR2
M02294_2.00
Arabidopsis thaliana
NKATDCBNN

NNVGHATMN
PBM
Weirauch et al.(2014)
pTH7097
0.766 0.787
MYR2
M07063_2.00
Arabidopsis thaliana
NNDAAKATTCYHHN

NDDRGAATMTTHNN
Dap-seq
OMalley et al.(2016)
At3g04030_col_a
0.766 0.787
MYR2
M07064_2.00
Arabidopsis thaliana
VRAAKATTCBHWNNN

NNNWDVGAATMTTYB
Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a
0.766 0.787
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN

NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.749 0.830
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS

SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.749 0.830
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN

NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.749 0.830
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH

DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.749 0.830
PHL11
M07134_2.00
Arabidopsis thaliana
NNRAAKATTCYHHN

NDDRGAATMTTYNN
Dap-seq
OMalley et al.(2016)
AT5G45580_col_a
0.697 0.745
PHL11
M07135_2.00
Arabidopsis thaliana
NRAAKATTCYHHNN

NNDDRGAATMTTYN
Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a
0.697 0.745
Q5IWM2_WHEAT
M11059_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB80_01
0.677 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra008411.1-P Myb 36 87

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

683 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000009576 Ailuropoda melanoleuca ENSAMEG00000009576 I 0.000
ENSP00000324064-D75 Bos grunniens ENSP00000324064-D75 I 0.000
ZNF436 Bos taurus ENSBTAG00000002594 I 0.000
ZNF436 Callithrix jacchus ENSCJAG00000005489 I 0.000
ZNF436 Canis familiaris ENSCAFG00000031798 I 0.000
ENSCPOG00000011396 Cavia porcellus ENSCPOG00000011396 I 0.000
ENSCSAG00000000923 Chlorocebus sabaeus ENSCSAG00000000923 I 0.000
ZNF436 Choloepus hoffmanni ENSCHOG00000005098 I 0.000
ZNF436 Dasypus novemcinctus ENSDNOG00000015883 I 0.000
Zfp46 Dipodomys ordii ENSDORG00000007438 I 0.000
ZNF436 Equus caballus ENSECAG00000011988 I 0.000
ZNF436 Erinaceus europaeus ENSEEUG00000005276 I 0.000
ZNF436 Felis catus ENSFCAG00000030008 I 0.000
ZNF436 Gorilla gorilla ENSGGOG00000011273 I 0.000
ZNF436 Homo sapiens ENSG00000125945 D 0.000
ENSSTOG00000001212 Ictidomys tridecemlineatus ENSSTOG00000001212 I 0.000
ZNF436 Loxodonta africana ENSLAFG00000012795 I 0.000
ENSMEUG00000013368 Macropus eugenii ENSMEUG00000013368 I 0.000
ZNF436 Microcebus murinus ENSMICG00000005876 I 0.000
ZNF436 Monodelphis domestica ENSMODG00000016145 I 0.000
ENSMPUG00000015896 Mustela putorius furo ENSMPUG00000015896 I 0.000
Zfp46 Mus musculus ENSMUSG00000051351 I 0.000
Myotis_brandtii_ZNF436_10029737 Myotis brandtii Myotis_brandtii_ZNF436_10029737 I 0.000
ZNF436 Myotis lucifugus ENSMLUG00000007596 I 0.000
ENSNLEG00000008477 Nomascus leucogenys ENSNLEG00000008477 I 0.000
ZNF436 Ochotona princeps ENSOPRG00000012417 I 0.000
ZNF436 Oryctolagus cuniculus ENSOCUG00000010670 I 0.000
ZNF436 Otolemur garnettii ENSOGAG00000009181 I 0.000
ENSOARG00000007586 Ovis aries ENSOARG00000007586 I 0.000
ZNF436 Pan troglodytes ENSPTRG00000000325 I 0.000
ENSPANG00000018160 Papio anubis ENSPANG00000018160 I 0.000
ENSPPYG00000001743 Pongo abelii ENSPPYG00000001743 I 0.000
ZNF436 Procavia capensis ENSPCAG00000010535 I 0.000
ZNF436 Pteropus vampyrus ENSPVAG00000014803 I 0.000
Zfp46 Rattus norvegicus ENSRNOG00000049975 I 0.000
ZNF436 Sorex araneus ENSSARG00000012155 I 0.000
ENSSSCG00000023614 Sus scrofa ENSSSCG00000023614 I 0.000
ZNF436 Tupaia belangeri ENSTBEG00000002827 I 0.000
ZNF436 Tursiops truncatus ENSTTRG00000007756 I 0.000
ZNF436 Vicugna pacos ENSVPAG00000006412 I 0.000