CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra008740
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra008740
T267803_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WER
M11047_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01
0.892
0.989
WER
M11048_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2
0.892
0.989
MYB23
M07133_2.00
Arabidopsis thaliana
HCAACWAHHHH
DDDDTWGTTGD
Dap-seq
OMalley et al.(2016)
MYB23_col_a
0.834
0.968
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra008740.1-P
Myb
17
64
KGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYL
Bra008740.1-P
Myb
70
115
RGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
99 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo9g165670
Brassica oleracea
Bo9g165670
I
0.909
WER
Arabidopsis lyrata
fgenesh2_kg.6__1454__AT5G14750.1
I
0.892
Cagra.3166s0078
Capsella grandiflora
Cagra.3166s0078
I
0.892
Carubv10001990m.g
Capsella rubella
Carubv10001990m.g
I
0.892
Thhalv10014715m.g
Eutrema salsugineum
Thhalv10014715m.g
I
0.892
Bostr.2902s0211
Boechera stricta
Bostr.2902s0211
I
0.892
Bo2g012170
Brassica oleracea
Bo2g012170
I
0.892
WER
Arabidopsis thaliana
AT5G14750
D
0.892
Bostr.1460s0063
Boechera stricta
Bostr.1460s0063
I
0.888
Bostr.7200s0005
Boechera stricta
Bostr.7200s0005
I
0.834
Cagra.3160s0003
Capsella grandiflora
Cagra.3160s0003
I
0.834
Carubv10005698m.g
Capsella rubella
Carubv10005698m.g
I
0.834
MYB23
Arabidopsis thaliana
AT5G40330
D
0.834
Bra025589
Brassica rapa
Bra025589
I
0.834
Thhalv10028340m.g
Eutrema salsugineum
Thhalv10028340m.g
I
0.819
Bra023486
Brassica rapa
Bra023486
I
0.794
Eucgr.J02212
Eucalyptus grandis
Eucgr.J02212
I
0.789
Thhalv10005428m.g
Eutrema salsugineum
Thhalv10005428m.g
I
0.774
cassava26193.m1
Manihot esculenta
cassava26193.m1
I
0.774
Bra025311
Brassica rapa
Bra025311
I
0.769
Pm024725
Prunus mume
Pm024725
I
0.768
VIT_17s0000g08480
Vitis vinifera
VIT_17s0000g08480
I
0.764
TCM_016886
Theobroma cacao
TCM_016886
I
0.763
VIT_14s0066g01220
Vitis vinifera
VIT_14s0066g01220
I
0.760
MDP0000578193
Malus domestica
MDP0000578193
I
0.759
Gorai.007G001800
Gossypium raimondii
Gorai.007G001800
I
0.758
TCM_012057
Theobroma cacao
TCM_012057
I
0.758
Bo7g090950
Brassica oleracea
Bo7g090950
I
0.757
SapurV1A.1178s0050
Salix purpurea
SapurV1A.1178s0050
I
0.756
PRUPE_ppa010908mg
Prunus persica
PRUPE_ppa010908mg
I
0.753
cassava27350.m1
Manihot esculenta
cassava27350.m1
I
0.747
Bra039065
Brassica rapa
Bra039065
I
0.746
MDP0000650225
Malus domestica
MDP0000650225
I
0.742
GL1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5000559
I
0.741
GL1
Arabidopsis thaliana
AT3G27920
I
0.741
Aquca_025_00333
Aquilegia coerulea
Aquca_025_00333
I
0.734
POPTR_0012s08190
Populus trichocarpa
POPTR_0012s08190
I
0.733
Aquca_002_00170
Aquilegia coerulea
Aquca_002_00170
I
0.731
evm.TU.supercontig_124.57
Carica papaya
evm.TU.supercontig_124.57
I
0.730
Carubv10018791m.g
Capsella rubella
Carubv10018791m.g
I
0.725
Cagra.4961s0006
Capsella grandiflora
Cagra.4961s0006
I
0.725
Ciclev10017556m.g
Citrus clementina
Ciclev10017556m.g
I
0.724
SapurV1A.1404s0020
Salix purpurea
SapurV1A.1404s0020
I
0.723
Eucgr.B00373
Eucalyptus grandis
Eucgr.B00373
I
0.721
Eucgr.I01791
Eucalyptus grandis
Eucgr.I01791
I
0.718
POPTR_0015s08680
Populus trichocarpa
POPTR_0015s08680
I
0.716
Gorai.012G061800
Gossypium raimondii
Gorai.012G061800
I
0.716
TCM_010360
Theobroma cacao
TCM_010360
I
0.709
MDP0000199965
Malus domestica
MDP0000199965
I
0.709
Bostr.0556s0467
Boechera stricta
Bostr.0556s0467
I
0.701
POPTR_0015s08700
Populus trichocarpa
POPTR_0015s08700
I
0.696
VIT_15s0046g00170
Vitis vinifera
VIT_15s0046g00170
I
0.695
Gorai.008G126700
Gossypium raimondii
Gorai.008G126700
I
0.695
TCM_005112
Theobroma cacao
TCM_005112
I
0.695
MDP0000915330
Malus domestica
MDP0000915330
I
0.695
gene18691-v1.0-hybrid
Fragaria vesca
gene18691-v1.0-hybrid
I
0.695
evm.TU.supercontig_96.57
Carica papaya
evm.TU.supercontig_96.57
I
0.695
Eucgr.D02390
Eucalyptus grandis
Eucgr.D02390
I
0.695
PK14784.1
Cannabis sativa
PK14784.1
I
0.695
Pm018338
Prunus mume
Pm018338
I
0.692
30068.m002544
Ricinus communis
30068.m002544
I
0.692
cassava34176.m1
Manihot esculenta
cassava34176.m1
I
0.692
PRUPE_ppa009439mg
Prunus persica
PRUPE_ppa009439mg
I
0.692
Gorai.004G151000
Gossypium raimondii
Gorai.004G151000
I
0.691
Cla011528
Citrullus lanatus
Cla011528
I
0.688
POPTR_0001s11100
Populus trichocarpa
POPTR_0001s11100
I
0.683
PDK_20s1716541g001
Phoenix dactylifera
PDK_20s1716541g001
I
0.683
SapurV1A.0059s0150
Salix purpurea
SapurV1A.0059s0150
I
0.683
POPTR_0003s14420
Populus trichocarpa
POPTR_0003s14420
I
0.683
LjT16O05.150.nd
Lotus japonicus
LjT16O05.150.nd
I
0.682
gene32181-v1.0-hybrid
Fragaria vesca
gene32181-v1.0-hybrid
I
0.678
SapurV1A.0013s0160
Salix purpurea
SapurV1A.0013s0160
I
0.674
POPTR_0014s09630
Populus trichocarpa
POPTR_0014s09630
I
0.674
MDP0000537324
Malus domestica
MDP0000537324
I
0.674
Gorai.004G150800
Gossypium raimondii
Gorai.004G150800
I
0.673
POPTR_0002s17460
Populus trichocarpa
POPTR_0002s17460
I
0.672
Eucgr.C00721
Eucalyptus grandis
Eucgr.C00721
I
0.671
cassava7672.valid.m1
Manihot esculenta
cassava7672.valid.m1
I
0.671
SapurV1A.0035s0040
Salix purpurea
SapurV1A.0035s0040
I
0.671
Eucgr.D01701
Eucalyptus grandis
Eucgr.D01701
I
0.670
VIT_01s0127g00730
Vitis vinifera
VIT_01s0127g00730
I
0.669
MTR_8g027345
Medicago truncatula
MTR_8g027345
I
0.669
Pm006678
Prunus mume
Pm006678
I
0.666
Gorai.004G130900
Gossypium raimondii
Gorai.004G130900
I
0.666
PRUPE_ppa014884mg
Prunus persica
PRUPE_ppa014884mg
I
0.666
MDP0000164048
Malus domestica
MDP0000164048
I
0.666
Ca_17627
Cicer arietinum
Ca_17627
I
0.666
Ciclev10021571m.g
Citrus clementina
Ciclev10021571m.g
I
0.665
orange1.1g040841m.g
Citrus sinensis
orange1.1g040841m.g
I
0.665
Pavir.Db02046
Panicum virgatum
Pavir.Db02046
I
0.665
Ciclev10009286m.g
Citrus clementina
Ciclev10009286m.g
I
0.664
orange1.1g025602m.g
Citrus sinensis
orange1.1g025602m.g
I
0.664
Cucsa.304110
Cucumis sativus
Cucsa.304110
I
0.663
TCM_004509
Theobroma cacao
TCM_004509
I
0.663
GLYMA10G35050
Glycine max
GLYMA10G35050
I
0.663
Ciclev10032713m.g
Citrus clementina
Ciclev10032713m.g
I
0.663
Eucgr.C00724
Eucalyptus grandis
Eucgr.C00724
I
0.663
orange1.1g047269m.g
Citrus sinensis
orange1.1g047269m.g
I
0.663
AMTR_s00024p00224470
Amborella trichopoda
AMTR_s00024p00224470
I
0.661