Bra009228 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra009228 T267811_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT1G14600
M01268_2.00
Arabidopsis thaliana
NWAYATTCYN

NRGAATRTWN
PBM
Lambert et al.(2019)
pTH11557
0.665 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra009228.1-P Myb 199 250

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

97 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo9g175820 Brassica oleracea Bo9g175820 I 0.891
Eucgr.A02444 Eucalyptus grandis Eucgr.A02444 N 0.870
Gorai.002G225400 Gossypium raimondii Gorai.002G225400 N 0.849
TCM_024886 Theobroma cacao TCM_024886 N 0.849
Bra005912 Brassica rapa Bra005912 N 0.843
Bo3g004040 Brassica oleracea Bo3g004040 N 0.843
Bostr.13129s0292 Boechera stricta Bostr.13129s0292 N 0.831
cassava39743.m1 Manihot esculenta cassava39743.m1 N 0.831
Cucsa.353890 Cucumis sativus Cucsa.353890 N 0.831
cassava12255.valid.m1 Manihot esculenta cassava12255.valid.m1 N 0.831
28582.m000316 Ricinus communis 28582.m000316 N 0.831
cassava12254.valid.m1 Manihot esculenta cassava12254.valid.m1 N 0.831
Cagra.8005s0016 Capsella grandiflora Cagra.8005s0016 N 0.831
Ciclev10012014m.g Citrus clementina Ciclev10012014m.g N 0.831
orange1.1g018583m.g Citrus sinensis orange1.1g018583m.g N 0.831
SapurV1A.0018s0530 Salix purpurea SapurV1A.0018s0530 N 0.831
Lus10021035.g Linum usitatissimum Lus10021035.g N 0.831
Thhalv10013850m.g Eutrema salsugineum Thhalv10013850m.g N 0.831
SapurV1A.0251s0040 Salix purpurea SapurV1A.0251s0040 N 0.831
POPTR_0016s04830 Populus trichocarpa POPTR_0016s04830 N 0.831
Carubv10003217m.g Capsella rubella Carubv10003217m.g N 0.831
Cla011853 Citrullus lanatus Cla011853 N 0.831
Bo2g007410 Brassica oleracea Bo2g007410 N 0.831
Bra028717 Brassica rapa Bra028717 N 0.831
fgenesh2_kg.6__627__AT5G06800.1 Arabidopsis lyrata fgenesh2_kg.6__627__AT5G06800.1 N 0.831
Lus10023816.g Linum usitatissimum Lus10023816.g N 0.830
GLYMA09G17404 Glycine max GLYMA09G17404 N 0.823
POPTR_0006s20540 Populus trichocarpa POPTR_0006s20540 N 0.823
MTR_1g053835 Medicago truncatula MTR_1g053835 N 0.823
Gorai.006G142000 Gossypium raimondii Gorai.006G142000 N 0.816
evm.TU.supercontig_85.82 Carica papaya evm.TU.supercontig_85.82 N 0.816
AT5G06800 Arabidopsis thaliana AT5G06800 N 0.813
Solyc10g078720.1 Solanum lycopersicum Solyc10g078720.1 N 0.800
PGSC0003DMG400011435 Solanum tuberosum PGSC0003DMG400011435 N 0.800
Ca_07304 Cicer arietinum Ca_07304 I 0.798
Ca_14198 Cicer arietinum Ca_14198 N 0.783
GLYMA02G30800 Glycine max GLYMA02G30800 N 0.783
chr5.LjT42I01.50.nd Lotus japonicus chr5.LjT42I01.50.nd I 0.783
Aquca_012_00204 Aquilegia coerulea Aquca_012_00204 N 0.782
Ciclev10033388m.g Citrus clementina Ciclev10033388m.g N 0.782
Aquca_009_00165 Aquilegia coerulea Aquca_009_00165 N 0.782
orange1.1g035950m.g Citrus sinensis orange1.1g035950m.g N 0.782
MTR_7g093030 Medicago truncatula MTR_7g093030 N 0.779
gene22647-v1.0-hybrid Fragaria vesca gene22647-v1.0-hybrid N 0.773
Pm025973 Prunus mume Pm025973 N 0.773
MDP0000184307 Malus domestica MDP0000184307 N 0.773
PRUPE_ppa016067mg Prunus persica PRUPE_ppa016067mg N 0.773
MDP0000253656 Malus domestica MDP0000253656 N 0.773
PK00827.1 Cannabis sativa PK00827.1 N 0.770
MDP0000280005 Malus domestica MDP0000280005 N 0.767
VIT_08s0007g06310 Vitis vinifera VIT_08s0007g06310 I 0.748
mgf007532m Mimulus guttatus mgf007532m N 0.745
mgf007985m Mimulus guttatus mgf007985m N 0.745
GLYMA19G32850 Glycine max GLYMA19G32850 I 0.739
GLYMA03G29940 Glycine max GLYMA03G29940 I 0.739
28582.m000318 Ricinus communis 28582.m000318 N 0.733
cassava12253.valid.m1 Manihot esculenta cassava12253.valid.m1 N 0.731
VIT_08s0007g06180 Vitis vinifera VIT_08s0007g06180 I 0.726
chr1.LjT38A19.30.nc Lotus japonicus chr1.LjT38A19.30.nc N 0.717
28582.m000317 Ricinus communis 28582.m000317 N 0.714
30226.m001993 Ricinus communis 30226.m001993 N 0.712
GSMUA_Achr7G06370_001 Musa acuminata GSMUA_Achr7G06370_001 I 0.702
mgf017208m Mimulus guttatus mgf017208m N 0.700
VIT_13s0156g00390 Vitis vinifera VIT_13s0156g00390 I 0.700
cassava16780.m1 Manihot esculenta cassava16780.m1 I 0.693
Aquca_004_00369 Aquilegia coerulea Aquca_004_00369 I 0.690
SapurV1A.4156s0010 Salix purpurea SapurV1A.4156s0010 N 0.687
SapurV1A.0008s0360 Salix purpurea SapurV1A.0008s0360 N 0.687
AMTR_s00022p00190540 Amborella trichopoda AMTR_s00022p00190540 I 0.682
OMERI04G24260 Oryza meridionalis OMERI04G24260 I 0.681
ONIVA04G27220 Oryza nivara ONIVA04G27220 I 0.681
ORGLA04G0249600 Oryza glaberrima ORGLA04G0249600 I 0.681
OLONG_005000 Oryza longistaminata OLONG_005000 I 0.681
OPUNC04G26200 Oryza punctata OPUNC04G26200 I 0.681
OBART04G28680 Oryza barthii OBART04G28680 I 0.681
OB04G35670 Oryza brachyantha OB04G35670 I 0.681
ORUFI04G30350 Oryza rufipogon ORUFI04G30350 I 0.681
OGLUM04G28560 Oryza glumaepatula OGLUM04G28560 I 0.681
BGIOSGA014151 Oryza indica BGIOSGA014151 I 0.681
Pavir.Ga00160 Panicum virgatum Pavir.Ga00160 I 0.681
LPERR04G24240 Leersia perrieri LPERR04G24240 I 0.681
GRMZM2G124495 Zea mays GRMZM2G124495 I 0.681
Si022099m.g Setaria italica Si022099m.g I 0.681
BRADI5G25320 Brachypodium distachyon BRADI5G25320 I 0.681
OS04G0665600 Oryza sativa OS04G0665600 I 0.681
Sb06g031970 Sorghum bicolor Sb06g031970 I 0.681
GSMUA_Achr4G19300_001 Musa acuminata GSMUA_Achr4G19300_001 I 0.680
POPTR_0001s23560 Populus trichocarpa POPTR_0001s23560 N 0.672
Pavir.J05593 Panicum virgatum Pavir.J05593 I 0.670
Eucgr.A00517 Eucalyptus grandis Eucgr.A00517 I 0.667
Cagra.3501s0036 Capsella grandiflora Cagra.3501s0036 I 0.665
Bra026202 Brassica rapa Bra026202 I 0.665
fgenesh2_kg.1__1592__AT1G14600.1 Arabidopsis lyrata fgenesh2_kg.1__1592__AT1G14600.1 I 0.665
AT1G14600 Arabidopsis thaliana AT1G14600 D 0.665
Carubv10010057m.g Capsella rubella Carubv10010057m.g I 0.665
Thhalv10008620m.g Eutrema salsugineum Thhalv10008620m.g I 0.665
Bo5g019810 Brassica oleracea Bo5g019810 I 0.665