Bra012038 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra012038 T267839_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC

GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.745 0.785
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM

KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.745 0.785
GAM1_ORYSI
M11055_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.745 0.785
MYB33
M02306_2.00
Arabidopsis thaliana
HAACNRHHNN

NNDDYNGTTD
PBM
Weirauch et al.(2014)
pTH8204
0.724 0.763
MYB33
M07120_2.00
Arabidopsis thaliana
NTAACYGWHWH

DWDWCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB33_col_a
0.724 0.763
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW

WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.723 0.796
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW

WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.723 0.796
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH

DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.723 0.796
MYB101
M07051_2.00
Arabidopsis thaliana
NWHHNWAACCGWWHH

DDWWCGGTTWNDDWN
Dap-seq
OMalley et al.(2016)
MYB101_col_a
0.716 0.774
MYB101
M07052_2.00
Arabidopsis thaliana
DHHHVTAACYGWHWN

NWDWCRGTTABDDDH
Dap-seq
OMalley et al.(2016)
MYB101_colamp_a
0.716 0.774
Q9FR42_TOBAC
M11076_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBAS1_01
0.715 0.742
AtMYB81
M07049_2.00
Arabidopsis thaliana
VTAACNGHWWH

DWWDCNGTTAB
Dap-seq
OMalley et al.(2016)
MYB81_col_a
0.713 0.849
AtMYB81
M07050_2.00
Arabidopsis thaliana
DHHNYAACBGHWWH

DWWDCVGTTRNDDH
Dap-seq
OMalley et al.(2016)
MYB81_colamp_a
0.713 0.849
ATMYB65
M01076_2.00
Arabidopsis thaliana
HAACNRHHN

NDDYNGTTD
PBM
Sullivan et al.(2014)
pTH7084
0.706 0.742
ATMYB65
M07076_2.00
Arabidopsis thaliana
DHHNTAACBGHMW

WKDCVGTTANDDH
Dap-seq
OMalley et al.(2016)
MYB65_col200_a
0.706 0.742
ATMYB65
M07077_2.00
Arabidopsis thaliana
NTAACYGHMWHNDHN

NDHNDWKDCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB65_colamp_a
0.706 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012038.1-P Myb 508 555
Bra012038.1-P Myb 561 606

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_08967 Aegilops tauschii F775_08967 I 0.683
F775_28392 Aegilops tauschii F775_28392 I 0.745
F775_23034 Aegilops tauschii F775_23034 I 0.694
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.761
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.760
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.725
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.744
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.739
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I 0.716
ATMYB65 Arabidopsis lyrata fgenesh2_kg.3__1182__AT3G11440.1 I 0.706
MYB97 Arabidopsis lyrata fgenesh2_kg.7__1539__AT4G26930.1 I 0.697
AtMYB81 Arabidopsis lyrata Al_scaffold_0004_975 I 0.721
MYB97 Arabidopsis thaliana AT4G26930 I 0.697
AtMYB81 Arabidopsis thaliana AT2G26960 D 0.713
MYB101 Arabidopsis thaliana AT2G32460 D 0.716
ATMYB65 Arabidopsis thaliana AT3G11440 D 0.706
MYB33 Arabidopsis thaliana AT5G06100 D 0.724
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.717
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I 0.743
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I 0.716
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.717
Bostr.6864s0293 Boechera stricta Bostr.6864s0293 I 0.717
Bostr.19424s1075 Boechera stricta Bostr.19424s1075 I 0.706
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.745
Bo1g141040 Brassica oleracea Bo1g141040 I 0.676
Bo3g021790 Brassica oleracea Bo3g021790 I 0.697
Bo3g026690 Brassica oleracea Bo3g026690 I 0.716
Bo9g119060 Brassica oleracea Bo9g119060 I 0.717
Bo4g046000 Brassica oleracea Bo4g046000 I 0.716
Bo4g076940 Brassica oleracea Bo4g076940 I 0.854
Bo4g178040 Brassica oleracea Bo4g178040 I 0.706
Bo5g136570 Brassica oleracea Bo5g136570 I 0.697
Bo3g041750 Brassica oleracea Bo3g041750 I 0.789
Bra002938 Brassica rapa Bra002938 I 0.717
Bra000531 Brassica rapa Bra000531 I 0.789
Bra002042 Brassica rapa Bra002042 I 0.676
Bra005597 Brassica rapa Bra005597 I 0.716
Bra021791 Brassica rapa Bra021791 I 0.716
Bra035547 Brassica rapa Bra035547 I 0.697
Bra022888 Brassica rapa Bra022888 I 0.701
Bra028997 Brassica rapa Bra028997 I 0.697
Bra034842 Brassica rapa Bra034842 I 0.697
PK15478.1 Cannabis sativa PK15478.1 I 0.708
PK17293.1 Cannabis sativa PK17293.1 I 0.683
Cagra.1655s0026 Capsella grandiflora Cagra.1655s0026 I 0.706
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I 0.743
Cagra.9104s0001 Capsella grandiflora Cagra.9104s0001 I 0.726
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.717
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I 0.716
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.717
Carubv10025403m.g Capsella rubella Carubv10025403m.g I 0.726
Carubv10025227m.g Capsella rubella Carubv10025227m.g I 0.716
Carubv10013393m.g Capsella rubella Carubv10013393m.g I 0.706
Carubv10000715m.g Capsella rubella Carubv10000715m.g I 0.743
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I 0.683
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.764
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.740
Ca_21739 Cicer arietinum Ca_21739 I 0.752
Ca_25013 Cicer arietinum Ca_25013 I 0.761
Ca_20081 Cicer arietinum Ca_20081 I 0.721
Ca_15422 Cicer arietinum Ca_15422 I 0.678
Ca_07119 Cicer arietinum Ca_07119 I 0.719
Ca_06236 Cicer arietinum Ca_06236 I 0.662
Cla005406 Citrullus lanatus Cla005406 I 0.735
Cla007782 Citrullus lanatus Cla007782 I 0.730
Cla013880 Citrullus lanatus Cla013880 I 0.725
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I 0.717
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.733
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.731
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.731
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.733
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I 0.717
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.751
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.735
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.712
Eucgr.A01122 Eucalyptus grandis Eucgr.A01122 I 0.668
Eucgr.B00866 Eucalyptus grandis Eucgr.B00866 I 0.667
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.752
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I 0.743
Thhalv10025350m.g Eutrema salsugineum Thhalv10025350m.g I 0.699
Thhalv10020455m.g Eutrema salsugineum Thhalv10020455m.g I 0.712
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.717
Thhalv10002011m.g Eutrema salsugineum Thhalv10002011m.g I 0.786
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I 0.716
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I 0.713
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.731
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.740
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.730
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.699
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.717
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.728
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.742
GLYMA12G31950 Glycine max GLYMA12G31950 I 0.728
GLYMA08G42955 Glycine max GLYMA08G42955 I 0.714
GLYMA08G42920 Glycine max GLYMA08G42920 I 0.710
GLYMA13G04031 Glycine max GLYMA13G04031 I 0.661
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.731
GLYMA04G15150 Glycine max GLYMA04G15150 I 0.716
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I 0.666
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.759
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I 0.730
Gorai.002G089900 Gossypium raimondii Gorai.002G089900 I 0.675
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.750
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I 0.666
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.754
MLOC_6041 Hordeum vulgare MLOC_6041 I 0.690
Gam1 Hordeum vulgare Q96464_HORVU D 0.745
LPERR05G16930 Leersia perrieri LPERR05G16930 I 0.682
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.751
Lus10027189.g Linum usitatissimum Lus10027189.g I 0.681
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.725
Lus10035275.g Linum usitatissimum Lus10035275.g I 0.681
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.747
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.725
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.747
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.751
LjSGA_010688.1 Lotus japonicus LjSGA_010688.1 I 0.689
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.744
LjSGA_026914.2 Lotus japonicus LjSGA_026914.2 I 0.672
LjSGA_057622.2 Lotus japonicus LjSGA_057622.2 I 0.680
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.721
MDP0000176798 Malus domestica MDP0000176798 I 0.738
MDP0000308617 Malus domestica MDP0000308617 I 0.740
MDP0000179306 Malus domestica MDP0000179306 I 0.740
MDP0000151688 Malus domestica MDP0000151688 I 0.738
MDP0000147309 Malus domestica MDP0000147309 I 0.717
MDP0000175835 Malus domestica MDP0000175835 I 0.738
cassava11031.m1 Manihot esculenta cassava11031.m1 I 0.715
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.764
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.714
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.759
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.727
MTR_3g052450 Medicago truncatula MTR_3g052450 I 0.700
MTR_3g052430 Medicago truncatula MTR_3g052430 I 0.725
MTR_3g011610 Medicago truncatula MTR_3g011610 I 0.745
MTR_2g088170 Medicago truncatula MTR_2g088170 I 0.718
MTR_1g021230 Medicago truncatula MTR_1g021230 I 0.679
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.760
mgf025568m Mimulus guttatus mgf025568m I 0.725
mgf019173m Mimulus guttatus mgf019173m I 0.708
mgf002965m Mimulus guttatus mgf002965m I 0.747
mgf010934m Mimulus guttatus mgf010934m I 0.708
mgf020500m Mimulus guttatus mgf020500m I 0.729
GSMUA_Achr10G29280_001 Musa acuminata GSMUA_Achr10G29280_001 I 0.702
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.735
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I 0.693
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.760
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D 0.715
OBART06G20450 Oryza barthii OBART06G20450 I 0.667
OBART05G21120 Oryza barthii OBART05G21120 I 0.689
OBART03G24120 Oryza barthii OBART03G24120 I 0.665
OBART01G34660 Oryza barthii OBART01G34660 I 0.745
OB01G43550 Oryza brachyantha OB01G43550 I 0.745
OB03G32840 Oryza brachyantha OB03G32840 I 0.665
ORGLA03G0224700 Oryza glaberrima ORGLA03G0224700 I 0.665
ORGLA06G0168900 Oryza glaberrima ORGLA06G0168900 I 0.667
OGLUM06G26120 Oryza glumaepatula OGLUM06G26120 I 0.670
OGLUM03G24880 Oryza glumaepatula OGLUM03G24880 I 0.665
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.745
OGLUM06G21530 Oryza glumaepatula OGLUM06G21530 I 0.667
OGLUM05G22330 Oryza glumaepatula OGLUM05G22330 I 0.689
BGIOSGA017818 Oryza indica BGIOSGA017818 I 0.689
BGIOSGA020673 Oryza indica BGIOSGA020673 I 0.670
GAM1 Oryza indica BGIOSGA004670 I 0.745
OLONG_019401 Oryza longistaminata OLONG_019401 I 0.692
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.745
OLONG_025057 Oryza longistaminata OLONG_025057 I 0.665
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.745
OMERI06G24960 Oryza meridionalis OMERI06G24960 I 0.670
OMERI03G21920 Oryza meridionalis OMERI03G21920 I 0.665
OMERI06G21070 Oryza meridionalis OMERI06G21070 I 0.667
ONIVA04G15310 Oryza nivara ONIVA04G15310 I 0.665
ONIVA06G28020 Oryza nivara ONIVA06G28020 I 0.670
ONIVA06G24230 Oryza nivara ONIVA06G24230 I 0.667
ONIVA05G21800 Oryza nivara ONIVA05G21800 I 0.669
OPUNC06G22490 Oryza punctata OPUNC06G22490 I 0.670
OPUNC06G18670 Oryza punctata OPUNC06G18670 I 0.667
OPUNC05G18800 Oryza punctata OPUNC05G18800 I 0.685
OPUNC03G22220 Oryza punctata OPUNC03G22220 I 0.665
ORUFI06G26670 Oryza rufipogon ORUFI06G26670 I 0.670
ORUFI05G22370 Oryza rufipogon ORUFI05G22370 I 0.689
ORUFI06G21880 Oryza rufipogon ORUFI06G21880 I 0.667
ORUFI03G24730 Oryza rufipogon ORUFI03G24730 I 0.665
GAMYB Oryza sativa OS01G0812000 I 0.745
OS03G0578900 Oryza sativa OS03G0578900 I 0.665
OS06G0679400 Oryza sativa OS06G0679400 I 0.670
OS05G0490600 Oryza sativa OS05G0490600 I 0.689
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.745
Pavir.Ib03827 Panicum virgatum Pavir.Ib03827 I 0.669
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.734
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.745
Pavir.Db00593 Panicum virgatum Pavir.Db00593 I 0.666
myb.Ph3 Petunia x hybrida Q02994_PETHY D 0.723
PDK_20s1383724g001 Phoenix dactylifera PDK_20s1383724g001 I 0.688
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I 0.725
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I 0.731
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.731
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.725
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.759
MYB101 Populus trichocarpa POPTR_0002s21300 I 0.689
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.759
Pm011812 Prunus mume Pm011812 I 0.698
Pm015094 Prunus mume Pm015094 I 0.738
Pm016605 Prunus mume Pm016605 I 0.747
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.747
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.740
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.715
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.738
29823.m000215 Ricinus communis 29823.m000215 I 0.715
29686.m000890 Ricinus communis 29686.m000890 I 0.764
29785.m000932 Ricinus communis 29785.m000932 I 0.731
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I 0.706
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I 0.725
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I 0.717
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I 0.717
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.759
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.759
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.722
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.764
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.764
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.764
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.764
Si006555m.g Setaria italica Si006555m.g I 0.666
Si000907m.g Setaria italica Si000907m.g I 0.745
Si039629m.g Setaria italica Si039629m.g I 0.669
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.725
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.693
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.723
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.745
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.725
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.693
PGSC0003DMG400027418 Solanum tuberosum PGSC0003DMG400027418 I 0.678
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.723
Sb01g015920 Sorghum bicolor Sb01g015920 I 0.669
Sb03g037680 Sorghum bicolor Sb03g037680 I 0.719
Sb10g027280 Sorghum bicolor Sb10g027280 I 0.666
TCM_044611 Theobroma cacao TCM_044611 I 0.759
TCM_011907 Theobroma cacao TCM_011907 I 0.717
TCM_030853 Theobroma cacao TCM_030853 I 0.675
TCM_041010 Theobroma cacao TCM_041010 I 0.731
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.745
Traes_1BL_CF98E922B Triticum aestivum Traes_1BL_CF98E922B I 0.676
TRIUR3_15006 Triticum urartu TRIUR3_15006 I 0.683
TRIUR3_17275 Triticum urartu TRIUR3_17275 I 0.676
TRIUR3_20797 Triticum urartu TRIUR3_20797 I 0.694
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.745
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I 0.726
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.714
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.750
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I 0.714
GRMZM2G070523 Zea mays GRMZM2G070523 I 0.669
AC217264.3_FG005 Zea mays AC217264.3_FG005 I 0.669
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.741