Bra013277 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra013277 T267857_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
APRR2
M02300_2.00
Arabidopsis thaliana
NNRNWATCNN

NNGATWNYNN
PBM
Weirauch et al.(2014)
pTH7102
0.863 0.936
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra013277.1-P Myb 278 328

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
APRR2 Arabidopsis thaliana AT4G18020 D 0.863
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I 0.801
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I 0.868
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I 0.808
Eucgr.K01056 Eucalyptus grandis Eucgr.K01056 I 0.680
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I 0.860
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I 0.868
Carubv10026528m.g Capsella rubella Carubv10026528m.g I 0.685
Carubv10004540m.g Capsella rubella Carubv10004540m.g I 0.774
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I 0.774
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I 0.685
Bostr.3148s0040 Boechera stricta Bostr.3148s0040 I 0.685
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I 0.909
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I 0.811
Cucsa.321580 Cucumis sativus Cucsa.321580 I 0.834
Cucsa.313480 Cucumis sativus Cucsa.313480 I 0.691
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I 0.752
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I 0.739
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I 0.778
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I 0.770
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I 0.760
PK19826.1 Cannabis sativa PK19826.1 I 0.868
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I 0.909
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I 0.685
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I 0.796
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I 0.790
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I 0.868
MDP0000248863 Malus domestica MDP0000248863 I 0.838
MDP0000237396 Malus domestica MDP0000237396 I 0.853
Lus10040109.g Linum usitatissimum Lus10040109.g I 0.829
Lus10030938.g Linum usitatissimum Lus10030938.g I 0.734
Lus10011044.g Linum usitatissimum Lus10011044.g I 0.850
Lus10003013.g Linum usitatissimum Lus10003013.g I 0.795
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I 0.778
cassava42047.valid.m1 Manihot esculenta cassava42047.valid.m1 I 0.752
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I 0.850
MTR_5g014040 Medicago truncatula MTR_5g014040 I 0.778
MTR_4g098870 Medicago truncatula MTR_4g098870 I 0.777
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I 0.696
GLYMA17G16360 Glycine max GLYMA17G16360 I 0.767
GLYMA11G04441 Glycine max GLYMA11G04441 I 0.760
GLYMA05G06070 Glycine max GLYMA05G06070 I 0.730
GLYMA01G40900 Glycine max GLYMA01G40900 I 0.760
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I 0.685
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I 0.863
Bra013279 Brassica rapa Bra013279 I 0.909
Bra013278 Brassica rapa Bra013278 I 0.909
Bra012623 Brassica rapa Bra012623 I 0.909
Bo7g105690 Brassica oleracea Bo7g105690 I 0.909
Bo1g019180 Brassica oleracea Bo1g019180 I 0.909
GLK2 Arabidopsis thaliana AT5G44190 I 0.685
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I 0.770
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I 0.705
30054.m000786 Ricinus communis 30054.m000786 I 0.857
Pm014733 Prunus mume Pm014733 I 0.868
Cla016403 Citrullus lanatus Cla016403 I 0.739
Cla008926 Citrullus lanatus Cla008926 I 0.834
Ca_24009 Cicer arietinum Ca_24009 I 0.711
Ca_12825 Cicer arietinum Ca_12825 I 0.770
Ca_02285 Cicer arietinum Ca_02285 I 0.778
APRR2 Vitis vinifera VIT_02s0012g00570 I 0.822
TCM_015780 Theobroma cacao TCM_015780 I 0.819
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I 0.770
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I 0.705
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I 0.760
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I 0.868
POPTR_0003s08600 Populus trichocarpa POPTR_0003s08600 I 0.754
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I 0.772
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I 0.711