Bra014169 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra014169 T267865_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT1G49010
M01269_2.00
Arabidopsis thaliana
NNYWATCNN

NNGATWRNN
PBM
Lambert et al.(2019)
pTH11535
0.754 0.826
AT1G49010
M07022_2.00
Arabidopsis thaliana
NHHWWYCTTATCYWH

DWRGATAAGRWWDDN
Dap-seq
OMalley et al.(2016)
At1g49010_col_a
0.754 0.826
AT1G49010
M07023_2.00
Arabidopsis thaliana
WWYCTTATCYWHWHH

DDWDWRGATAAGRWW
Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a
0.754 0.826
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra014169.1-P Myb 132 177

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo00685s060 Brassica oleracea Bo00685s060 I 0.887
Thhalv10011650m.g Eutrema salsugineum Thhalv10011650m.g I 0.778
Bo6g018000 Brassica oleracea Bo6g018000 I 0.771
Bra018772 Brassica rapa Bra018772 I 0.764
AT1G49010 Arabidopsis thaliana AT1G49010 D 0.754
Bostr.26675s0270 Boechera stricta Bostr.26675s0270 I 0.748
scaffold_104540.1 Arabidopsis lyrata scaffold_104540.1 I 0.745
Carubv10009808m.g Capsella rubella Carubv10009808m.g I 0.720
Cagra.1613s0002 Capsella grandiflora Cagra.1613s0002 I 0.720
TCM_012262 Theobroma cacao TCM_012262 I 0.717
Eucgr.K02659 Eucalyptus grandis Eucgr.K02659 I 0.714
Solyc03g119740.2 Solanum lycopersicum Solyc03g119740.2 I 0.710
SapurV1A.0583s0020 Salix purpurea SapurV1A.0583s0020 I 0.701
POPTR_0012s05720 Populus trichocarpa POPTR_0012s05720 I 0.701
Ciclev10021342m.g Citrus clementina Ciclev10021342m.g I 0.694
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.689
Ca_06612 Cicer arietinum Ca_06612 I 0.672
Pm030197 Prunus mume Pm030197 I 0.667
PRUPE_ppa009092mg Prunus persica PRUPE_ppa009092mg I 0.667
GLYMA05G07980 Glycine max GLYMA05G07980 I 0.665