Bra015939 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra015939 T267880_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.777 0.839
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra015939.1-P Myb 14 61
Bra015939.1-P Myb 67 112

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g118350 Brassica oleracea Bo6g118350 I 0.909
Thhalv10018705m.g Eutrema salsugineum Thhalv10018705m.g I 0.872
MYB122 Arabidopsis thaliana AT1G74080 I 0.859
Bo2g080900 Brassica oleracea Bo2g080900 I 0.847
Bra008131 Brassica rapa Bra008131 I 0.837
ATMYB122 Arabidopsis lyrata fgenesh2_kg.2__1680__AT1G74080.1 I 0.834
Carubv10020723m.g Capsella rubella Carubv10020723m.g I 0.793
Bo8g067910 Brassica oleracea Bo8g067910 I 0.783
Bra016553 Brassica rapa Bra016553 I 0.783
Bra031035 Brassica rapa Bra031035 I 0.781
Bo8g104300 Brassica oleracea Bo8g104300 I 0.781
Bo5g025570 Brassica oleracea Bo5g025570 I 0.780
Thhalv10008152m.g Eutrema salsugineum Thhalv10008152m.g I 0.780
Bra025666 Brassica rapa Bra025666 I 0.780
MYB51 Arabidopsis lyrata fgenesh2_kg.1__2031__AT1G18570.1 I 0.777
MYB51 Arabidopsis thaliana AT1G18570 D 0.777
Bostr.7128s0464 Boechera stricta Bostr.7128s0464 I 0.777
Carubv10009563m.g Capsella rubella Carubv10009563m.g I 0.777
Cagra.4153s0023 Capsella grandiflora Cagra.4153s0023 I 0.777
evm.TU.supercontig_3.239 Carica papaya evm.TU.supercontig_3.239 I 0.770
Bostr.3288s0058 Boechera stricta Bostr.3288s0058 I 0.761
cassava44039.valid.m1 Manihot esculenta cassava44039.valid.m1 I 0.734
Carubv10001328m.g Capsella rubella Carubv10001328m.g I 0.731
Cagra.2925s0017 Capsella grandiflora Cagra.2925s0017 I 0.731
Thhalv10013952m.g Eutrema salsugineum Thhalv10013952m.g I 0.731
Bostr.13129s0197 Boechera stricta Bostr.13129s0197 I 0.731
MYB29 Arabidopsis thaliana AT5G07690 I 0.731
Bra005949 Brassica rapa Bra005949 I 0.727
cassava47112.m1 Manihot esculenta cassava47112.m1 I 0.726
cassava46146.m1 Manihot esculenta cassava46146.m1 I 0.726
Lus10019085.g Linum usitatissimum Lus10019085.g I 0.723
Bo9g014380 Brassica oleracea Bo9g014380 I 0.720
Thhalv10004638m.g Eutrema salsugineum Thhalv10004638m.g I 0.720
Carubv10027524m.g Capsella rubella Carubv10027524m.g I 0.720
Bo9g175680 Brassica oleracea Bo9g175680 I 0.720
ATMYB34 Arabidopsis lyrata fgenesh2_kg.8__2056__AT5G60890.1 I 0.720
Bostr.26833s0149 Boechera stricta Bostr.26833s0149 I 0.720
Bra013000 Brassica rapa Bra013000 I 0.720
MYB34 Arabidopsis thaliana AT5G60890 I 0.720
Cagra.0542s0036 Capsella grandiflora Cagra.0542s0036 I 0.719
Carubv10027861m.g Capsella rubella Carubv10027861m.g I 0.719
Bostr.26833s0098 Boechera stricta Bostr.26833s0098 I 0.719
MYB28 Arabidopsis lyrata scaffold_802785.1 I 0.719
MYB28 Arabidopsis thaliana AT5G61420 I 0.719
Bo9g014610 Brassica oleracea Bo9g014610 I 0.719
Bra035929 Brassica rapa Bra035929 I 0.719
Thhalv10004407m.g Eutrema salsugineum Thhalv10004407m.g I 0.719
Bo2g161590 Brassica oleracea Bo2g161590 I 0.719
Bo7g098110 Brassica oleracea Bo7g098110 I 0.717
MYB29 Arabidopsis lyrata fgenesh2_kg.6__738__AT5G07690.1 I 0.715
Bra035954 Brassica rapa Bra035954 I 0.711
PK27708.1 Cannabis sativa PK27708.1 I 0.711
Bo7g098590 Brassica oleracea Bo7g098590 I 0.709
Bra012961 Brassica rapa Bra012961 I 0.709
MYB76 Arabidopsis thaliana AT5G07700 I 0.709
MYB76 Arabidopsis lyrata Al_scaffold_0006_698 I 0.709
Bo3g004500 Brassica oleracea Bo3g004500 I 0.708
Bra029349 Brassica rapa Bra029349 I 0.701
Bo2g161180 Brassica oleracea Bo2g161180 I 0.701
PK14811.1 Cannabis sativa PK14811.1 I 0.699
PK01174.1 Cannabis sativa PK01174.1 I 0.698
Bra029350 Brassica rapa Bra029350 I 0.696
Bra029311 Brassica rapa Bra029311 I 0.695
Sb08g004720 Sorghum bicolor Sb08g004720 I 0.691
Pavir.Ca00231 Panicum virgatum Pavir.Ca00231 I 0.683
Si012017m.g Setaria italica Si012017m.g I 0.683
Si011098m.g Setaria italica Si011098m.g I 0.683
Pavir.Ca00232 Panicum virgatum Pavir.Ca00232 I 0.683
Si012585m.g Setaria italica Si012585m.g I 0.683
cassava46145.m1 Manihot esculenta cassava46145.m1 I 0.682
Gorai.003G097900 Gossypium raimondii Gorai.003G097900 I 0.681
Bo2g161170 Brassica oleracea Bo2g161170 I 0.678
GSMUA_Achr11G07180_001 Musa acuminata GSMUA_Achr11G07180_001 I 0.674
TCM_014091 Theobroma cacao TCM_014091 I 0.673
gene12738-v1.0-hybrid Fragaria vesca gene12738-v1.0-hybrid I 0.673
GSMUA_Achr9G08600_001 Musa acuminata GSMUA_Achr9G08600_001 I 0.671
GSMUA_Achr6G07260_001 Musa acuminata GSMUA_Achr6G07260_001 I 0.671
GSMUA_Achr10G16010_001 Musa acuminata GSMUA_Achr10G16010_001 I 0.671
GSMUA_Achr6G25420_001 Musa acuminata GSMUA_Achr6G25420_001 I 0.671
Bo7g117140 Brassica oleracea Bo7g117140 I 0.670
Bra017685 Brassica rapa Bra017685 I 0.670
SapurV1A.1807s0010 Salix purpurea SapurV1A.1807s0010 I 0.666
Pm014372 Prunus mume Pm014372 I 0.666
Gorai.007G179300 Gossypium raimondii Gorai.007G179300 I 0.666
PRUPE_ppa010716mg Prunus persica PRUPE_ppa010716mg I 0.666
TCM_019261 Theobroma cacao TCM_019261 I 0.666
POPTR_0015s04300 Populus trichocarpa POPTR_0015s04300 I 0.666
Eucgr.C03554 Eucalyptus grandis Eucgr.C03554 I 0.665
VIT_13s0084g00530 Vitis vinifera VIT_13s0084g00530 I 0.665
Lus10028435.g Linum usitatissimum Lus10028435.g I 0.663
Lus10041888.g Linum usitatissimum Lus10041888.g I 0.663
Eucgr.G01774 Eucalyptus grandis Eucgr.G01774 I 0.662
GSMUA_Achr2G20600_001 Musa acuminata GSMUA_Achr2G20600_001 I 0.662
POPTR_0013s14480 Populus trichocarpa POPTR_0013s14480 I 0.662
Thhalv10025926m.g Eutrema salsugineum Thhalv10025926m.g I 0.661
MYB32 Arabidopsis thaliana AT4G34990 I 0.661
Cagra.2350s0045 Capsella grandiflora Cagra.2350s0045 I 0.661
Carubv10005438m.g Capsella rubella Carubv10005438m.g I 0.661
AtMYB32 Arabidopsis lyrata scaffold_700628.1 I 0.661
Bostr.7867s1358 Boechera stricta Bostr.7867s1358 I 0.661
GRMZM2G041415 Zea mays GRMZM2G041415 I 0.661