Bra022602 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra022602 T267946_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.701 0.688
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra022602.1-P Myb 14 61
Bra022602.1-P Myb 67 112

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

208 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Q2TCH0_PETHY Petunia x hybrida Q2TCH0_PETHY D 0.701
gene18691-v1.0-hybrid Fragaria vesca gene18691-v1.0-hybrid I 0.684
Eucgr.C03151 Eucalyptus grandis Eucgr.C03151 I 0.683
Eucgr.C02096 Eucalyptus grandis Eucgr.C02096 I 0.667
Eucgr.C01374 Eucalyptus grandis Eucgr.C01374 I 0.880
Eucgr.C00826 Eucalyptus grandis Eucgr.C00826 I 0.679
Eucgr.C00724 Eucalyptus grandis Eucgr.C00724 I 0.699
Eucgr.C00721 Eucalyptus grandis Eucgr.C00721 I 0.677
Eucgr.B03606 Eucalyptus grandis Eucgr.B03606 I 0.685
Eucgr.B00866 Eucalyptus grandis Eucgr.B00866 I 0.674
Eucgr.A02110 Eucalyptus grandis Eucgr.A02110 I 0.675
Ciclev10021571m.g Citrus clementina Ciclev10021571m.g I 0.684
Eucgr.C03555 Eucalyptus grandis Eucgr.C03555 I 0.675
Eucgr.D02390 Eucalyptus grandis Eucgr.D02390 I 0.684
gene15390-v1.0-hybrid Fragaria vesca gene15390-v1.0-hybrid I 0.702
gene07416-v1.0-hybrid Fragaria vesca gene07416-v1.0-hybrid I 0.672
evm.TU.supercontig_96.57 Carica papaya evm.TU.supercontig_96.57 I 0.667
evm.TU.supercontig_46.32 Carica papaya evm.TU.supercontig_46.32 I 0.850
evm.TU.supercontig_28.71 Carica papaya evm.TU.supercontig_28.71 I 0.668
evm.TU.supercontig_25.114 Carica papaya evm.TU.supercontig_25.114 I 0.661
evm.TU.supercontig_126.33 Carica papaya evm.TU.supercontig_126.33 I 0.666
evm.TU.supercontig_119.55 Carica papaya evm.TU.supercontig_119.55 I 0.676
Eucgr.K01504 Eucalyptus grandis Eucgr.K01504 I 0.699
Eucgr.E01031 Eucalyptus grandis Eucgr.E01031 I 0.681
Ciclev10015648m.g Citrus clementina Ciclev10015648m.g I 0.685
Carubv10028642m.g Capsella rubella Carubv10028642m.g I 0.880
Carubv10006684m.g Capsella rubella Carubv10006684m.g I 0.697
cassava6228.valid.m1 Manihot esculenta cassava6228.valid.m1 I 0.667
cassava36365.valid.m1 Manihot esculenta cassava36365.valid.m1 I 0.680
cassava36364.valid.m1 Manihot esculenta cassava36364.valid.m1 I 0.678
cassava34176.m1 Manihot esculenta cassava34176.m1 I 0.671
cassava32672.m1 Manihot esculenta cassava32672.m1 I 0.824
cassava29820.valid.m1 Manihot esculenta cassava29820.valid.m1 I 0.753
cassava28702.m1 Manihot esculenta cassava28702.m1 I 0.666
Pm029489 Prunus mume Pm029489 I 0.719
Pm027586 Prunus mume Pm027586 I 0.832
Pm027047 Prunus mume Pm027047 I 0.680
cassava6348.valid.m1 Manihot esculenta cassava6348.valid.m1 I 0.685
cassava7672.valid.m1 Manihot esculenta cassava7672.valid.m1 I 0.677
Cagra.5428s0005 Capsella grandiflora Cagra.5428s0005 I 0.697
Cagra.0084s0008 Capsella grandiflora Cagra.0084s0008 I 0.880
Bostr.7305s0011 Boechera stricta Bostr.7305s0011 I 0.875
Bostr.3640s0147 Boechera stricta Bostr.3640s0147 I 0.670
Bostr.29044s0068 Boechera stricta Bostr.29044s0068 I 0.697
Aquca_009_00493 Aquilegia coerulea Aquca_009_00493 I 0.703
mgf023205m Mimulus guttatus mgf023205m I 0.773
fgenesh1_pm.scaffold_371000001 Physcomitrella patens fgenesh1_pm.scaffold_371000001 I 0.662
e_gw1.6.239.1 Physcomitrella patens e_gw1.6.239.1 I 0.669
cassava9274.m1 Manihot esculenta cassava9274.m1 I 0.685
Pm018338 Prunus mume Pm018338 I 0.681
gene25098-v1.0-hybrid Fragaria vesca gene25098-v1.0-hybrid I 0.661
PDK_20s1918041g001 Phoenix dactylifera PDK_20s1918041g001 I 0.714
SapurV1A.1730s0020 Salix purpurea SapurV1A.1730s0020 I 0.667
SapurV1A.1276s0060 Salix purpurea SapurV1A.1276s0060 I 0.710
SapurV1A.1276s0050 Salix purpurea SapurV1A.1276s0050 I 0.685
SapurV1A.0710s0070 Salix purpurea SapurV1A.0710s0070 I 0.674
SapurV1A.0710s0050 Salix purpurea SapurV1A.0710s0050 I 0.715
SapurV1A.0598s0010 Salix purpurea SapurV1A.0598s0010 I 0.671
SapurV1A.0390s0200 Salix purpurea SapurV1A.0390s0200 I 0.667
SapurV1A.0102s0340 Salix purpurea SapurV1A.0102s0340 I 0.667
SapurV1A.0081s0400 Salix purpurea SapurV1A.0081s0400 I 0.676
SapurV1A.0013s0160 Salix purpurea SapurV1A.0013s0160 I 0.706
Thhalv10003461m.g Eutrema salsugineum Thhalv10003461m.g I 0.667
Thhalv10014754m.g Eutrema salsugineum Thhalv10014754m.g I 0.906
Thhalv10022057m.g Eutrema salsugineum Thhalv10022057m.g I 0.670
PDK_20s1716541g001 Phoenix dactylifera PDK_20s1716541g001 I 0.686
PDK_20s1554342g001 Phoenix dactylifera PDK_20s1554342g001 I 0.716
PDK_20s1310471g002 Phoenix dactylifera PDK_20s1310471g002 I 0.719
LjT20L14.140.nd Lotus japonicus LjT20L14.140.nd I 0.662
LjSGA_023691.1 Lotus japonicus LjSGA_023691.1 I 0.710
chr1.CM0105.50.nd Lotus japonicus chr1.CM0105.50.nd I 0.710
PK16315.1 Cannabis sativa PK16315.1 I 0.684
PK14784.1 Cannabis sativa PK14784.1 I 0.684
PK05970.1 Cannabis sativa PK05970.1 I 0.667
PK01088.1 Cannabis sativa PK01088.1 I 0.834
SapurV1A.0003s0900 Salix purpurea SapurV1A.0003s0900 I 0.709
orange1.1g040841m.g Citrus sinensis orange1.1g040841m.g I 0.684
Gorai.010G087200 Gossypium raimondii Gorai.010G087200 I 0.677
Gorai.008G126700 Gossypium raimondii Gorai.008G126700 I 0.684
Gorai.007G350500 Gossypium raimondii Gorai.007G350500 I 0.685
Gorai.007G260600 Gossypium raimondii Gorai.007G260600 I 0.685
Gorai.004G151000 Gossypium raimondii Gorai.004G151000 I 0.667
Gorai.004G150800 Gossypium raimondii Gorai.004G150800 I 0.683
Gorai.004G044000 Gossypium raimondii Gorai.004G044000 I 0.671
Gorai.003G021100 Gossypium raimondii Gorai.003G021100 I 0.664
Gorai.001G044000 Gossypium raimondii Gorai.001G044000 I 0.859
Gorai.001G020600 Gossypium raimondii Gorai.001G020600 I 0.666
Lus10013762.g Linum usitatissimum Lus10013762.g I 0.693
Lus10039173.g Linum usitatissimum Lus10039173.g I 0.714
MDP0000031172 Malus domestica MDP0000031172 I 0.674
orange1.1g040726m.g Citrus sinensis orange1.1g040726m.g I 0.685
orange1.1g036215m.g Citrus sinensis orange1.1g036215m.g I 0.696
MDP0000915330 Malus domestica MDP0000915330 I 0.684
MDP0000791870 Malus domestica MDP0000791870 I 0.676
MDP0000723614 Malus domestica MDP0000723614 I 0.685
MDP0000655330 Malus domestica MDP0000655330 I 0.685
MDP0000264051 Malus domestica MDP0000264051 I 0.842
MDP0000210851 Malus domestica MDP0000210851 I 0.674
MDP0000184538 Malus domestica MDP0000184538 I 0.666
MDP0000167314 Malus domestica MDP0000167314 I 0.814
gene31098-v1.0-hybrid Fragaria vesca gene31098-v1.0-hybrid I 0.832
Pm013279 Prunus mume Pm013279 I 0.670
POPTR_0017s02990 Populus trichocarpa POPTR_0017s02990 I 0.667
GSMUA_Achr8G22690_001 Musa acuminata GSMUA_Achr8G22690_001 I 0.707
GSMUA_Achr6G04400_001 Musa acuminata GSMUA_Achr6G04400_001 I 0.707
GSMUA_Achr3G07950_001 Musa acuminata GSMUA_Achr3G07950_001 I 0.707
GSMUA_Achr3G07940_001 Musa acuminata GSMUA_Achr3G07940_001 I 0.716
GLYMA20G32510 Glycine max GLYMA20G32510 I 0.707
GLYMA20G32500 Glycine max GLYMA20G32500 I 0.680
GLYMA19G44660 Glycine max GLYMA19G44660 I 0.742
GLYMA17G05831 Glycine max GLYMA17G05831 I 0.697
GLYMA16G02570 Glycine max GLYMA16G02570 I 0.695
GLYMA14G24500 Glycine max GLYMA14G24500 I 0.685
GSMUA_Achr9G16040_001 Musa acuminata GSMUA_Achr9G16040_001 I 0.665
MTR_3g083540 Medicago truncatula MTR_3g083540 I 0.668
MTR_4g125520 Medicago truncatula MTR_4g125520 I 0.680
POPTR_0014s09630 Populus trichocarpa POPTR_0014s09630 I 0.706
POPTR_0013s05310 Populus trichocarpa POPTR_0013s05310 I 0.710
POPTR_0013s05300 Populus trichocarpa POPTR_0013s05300 I 0.676
POPTR_0006s23840 Populus trichocarpa POPTR_0006s23840 I 0.674
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I 0.713
POPTR_0003s21120 Populus trichocarpa POPTR_0003s21120 I 0.676
POPTR_0002s17460 Populus trichocarpa POPTR_0002s17460 I 0.709
PGSC0003DMG400030913 Solanum tuberosum PGSC0003DMG400030913 I 0.774
ORGLA03G0196700 Oryza glaberrima ORGLA03G0196700 I 0.661
MTR_7g117730 Medicago truncatula MTR_7g117730 I 0.698
GLYMA13G16890 Glycine max GLYMA13G16890 I 0.697
GLYMA13G09980 Glycine max GLYMA13G09980 I 0.685
TT2 Arabidopsis thaliana AT5G35550 I 0.697
MYB5 Arabidopsis thaliana AT3G13540 I 0.670
AMTR_s00068p00099460 Amborella trichopoda AMTR_s00068p00099460 I 0.694
AMTR_s00068p00097220 Amborella trichopoda AMTR_s00068p00097220 I 0.684
AMTR_s00068p00092800 Amborella trichopoda AMTR_s00068p00092800 I 0.684
AMTR_s00030p00146410 Amborella trichopoda AMTR_s00030p00146410 I 0.668
AMTR_s00024p00250970 Amborella trichopoda AMTR_s00024p00250970 I 0.666
AMTR_s00024p00224850 Amborella trichopoda AMTR_s00024p00224850 I 0.710
AMTR_s00024p00224470 Amborella trichopoda AMTR_s00024p00224470 I 0.701
AMTR_s00024p00224180 Amborella trichopoda AMTR_s00024p00224180 I 0.707
MYB82 Arabidopsis thaliana AT5G52600 I 0.880
Bo1g138250 Brassica oleracea Bo1g138250 I 0.687
Bo2g047590 Brassica oleracea Bo2g047590 I 0.898
GLYMA10G35050 Glycine max GLYMA10G35050 I 0.728
GLYMA07G05960 Glycine max GLYMA07G05960 I 0.695
TT2 Arabidopsis lyrata fgenesh2_kg.7__3049__AT5G35550.1 I 0.697
F775_26191 Aegilops tauschii F775_26191 I 0.677
Bra039395 Brassica rapa Bra039395 I 0.690
Bra035532 Brassica rapa Bra035532 I 0.664
Bra029113 Brassica rapa Bra029113 I 0.847
Bra027423 Brassica rapa Bra027423 I 0.679
Bo8g030520 Brassica oleracea Bo8g030520 I 0.664
Bo3g023140 Brassica oleracea Bo3g023140 I 0.847
AtMYB82 Arabidopsis lyrata Al_scaffold_0008_1642 I 0.858
POPTR_0018s05530 Populus trichocarpa POPTR_0018s05530 I 0.725
Pm005572 Prunus mume Pm005572 I 0.677
VIT_04s0008g01820 Vitis vinifera VIT_04s0008g01820 I 0.670
VIT_04s0008g01800 Vitis vinifera VIT_04s0008g01800 I 0.677
TCM_038131 Theobroma cacao TCM_038131 I 0.870
TCM_037559 Theobroma cacao TCM_037559 I 0.674
TCM_037555 Theobroma cacao TCM_037555 I 0.677
TCM_037379 Theobroma cacao TCM_037379 I 0.689
TCM_037377 Theobroma cacao TCM_037377 I 0.687
TCM_037376 Theobroma cacao TCM_037376 I 0.677
TCM_029121 Theobroma cacao TCM_029121 I 0.667
TCM_025910 Theobroma cacao TCM_025910 I 0.685
VIT_06s0004g00570 Vitis vinifera VIT_06s0004g00570 I 0.679
VIT_08s0007g07230 Vitis vinifera VIT_08s0007g07230 I 0.675
Pm005570 Prunus mume Pm005570 I 0.674
Cla016951 Citrullus lanatus Cla016951 I 0.843
Ca_03154 Cicer arietinum Ca_03154 I 0.671
Ca_01329 Cicer arietinum Ca_01329 I 0.715
VIT_15s0046g00170 Vitis vinifera VIT_15s0046g00170 I 0.667
VIT_13s0084g00530 Vitis vinifera VIT_13s0084g00530 I 0.703
VIT_11s0016g01320 Vitis vinifera VIT_11s0016g01320 I 0.666
VIT_11s0016g01310 Vitis vinifera VIT_11s0016g01310 I 0.677
VIT_11s0016g01300 Vitis vinifera VIT_11s0016g01300 I 0.674
VIT_09s0002g01410 Vitis vinifera VIT_09s0002g01410 I 0.706
TCM_024180 Theobroma cacao TCM_024180 I 0.685
TCM_010778 Theobroma cacao TCM_010778 I 0.664
TCM_004509 Theobroma cacao TCM_004509 I 0.677
POPTR_0018s05740 Populus trichocarpa POPTR_0018s05740 I 0.694
PRUPE_ppa022205mg Prunus persica PRUPE_ppa022205mg I 0.674
PRUPE_ppa019380mg Prunus persica PRUPE_ppa019380mg I 0.717
PRUPE_ppa016532mg Prunus persica PRUPE_ppa016532mg I 0.832
PRUPE_ppa010252mg Prunus persica PRUPE_ppa010252mg I 0.667
PRUPE_ppa023768mg Prunus persica PRUPE_ppa023768mg I 0.677
PRUPE_ppa009439mg Prunus persica PRUPE_ppa009439mg I 0.681
PRUPE_ppa006730mg Prunus persica PRUPE_ppa006730mg I 0.685
POPTR_0019s05210 Populus trichocarpa POPTR_0019s05210 I 0.671
POPTR_0018s05750 Populus trichocarpa POPTR_0018s05750 I 0.700
PRUPE_ppa024074mg Prunus persica PRUPE_ppa024074mg I 0.680
Sb01g032770 Sorghum bicolor Sb01g032770 I 0.681
Si038905m.g Setaria italica Si038905m.g I 0.681
Solyc07g008010.2 Solanum lycopersicum Solyc07g008010.2 I 0.774
Solyc12g049300.1 Solanum lycopersicum Solyc12g049300.1 I 0.690
SELMODRAFT_98669 Selaginella moellendorffii SELMODRAFT_98669 I 0.694
SELMODRAFT_127220 Selaginella moellendorffii SELMODRAFT_127220 I 0.694
ATMYB5 Arabidopsis lyrata scaffold_301556.1 I 0.670
TCM_000535 Theobroma cacao TCM_000535 I 0.665
Solyc01g005660.1 Solanum lycopersicum Solyc01g005660.1 I 0.666
POPTR_0018s12780 Populus trichocarpa POPTR_0018s12780 N 0.808
SapurV1A.0034s0330 Salix purpurea SapurV1A.0034s0330 N 0.784
VIT_11s0016g05690 Vitis vinifera VIT_11s0016g05690 N 0.689
VIT_11s0016g05660 Vitis vinifera VIT_11s0016g05660 N 0.736
Gorai.004G276500 Gossypium raimondii Gorai.004G276500 N 0.818
SapurV1A.0197s0090 Salix purpurea SapurV1A.0197s0090 N 0.764
POPTR_0006s06530 Populus trichocarpa POPTR_0006s06530 N 0.796
Cucsa.132300 Cucumis sativus Cucsa.132300 N 0.819
SapurV1A.2191s0020 Salix purpurea SapurV1A.2191s0020 N 0.764