Bra023637 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra023637 T267959_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH

DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.865 0.935
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD

HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.865 0.935
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW

WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.747 0.817
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH

DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.747 0.817
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN

NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.742 0.774
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD

HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.742 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra023637.1-P Myb 77 123
Bra023637.1-P Myb 129 174

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

384 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ASU_12051 Ascaris suum ASU_12051 N 0.000
Bm4897 Brugia malayi Bm4897 N 0.000
nDi.2.2.2.g05496 Dirofilaria immitis nDi.2.2.2.g05496 N 0.000
EEL_0000947001 Elaeophora elaphi EEL_0000947001 N 0.000
nLs.2.1.2.g01496 Litomosoides sigmodontis nLs.2.1.2.g01496 N 0.000
LOAG_17798 Loa loa LOAG_17798 N 0.000
OFLC_0000481301 Onchocerca flexuosa OFLC_0000481301 N 0.000
nOo.2.0.1.g00014 Onchocerca ochengi nOo.2.0.1.g00014 N 0.000
WBGene00242124 Onchocerca volvulus WBGene00242124 N 0.000
TCLT_0000154801 Thelazia callipaeda TCLT_0000154801 N 0.000
WUBG_04020 Wuchereria bancrofti WUBG_04020 N 0.000