CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra023637
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra023637
T267959_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH
DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.865
0.935
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD
HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.865
0.935
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW
WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.747
0.817
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH
DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.747
0.817
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN
NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.742
0.774
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD
HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.742
0.774
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra023637.1-P
Myb
77
123
RGHWRPTEDTKLKELVAQFGPQNWNVIANHLLGRSGKSCRLRWFNQL
Bra023637.1-P
Myb
129
174
KTAFTEEEELRLLAVHRAYGNKWALISRLFPGRTDNAVKNHWHVIM
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
384 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ASU_12051
Ascaris suum
ASU_12051
N
0.000
Bm4897
Brugia malayi
Bm4897
N
0.000
nDi.2.2.2.g05496
Dirofilaria immitis
nDi.2.2.2.g05496
N
0.000
EEL_0000947001
Elaeophora elaphi
EEL_0000947001
N
0.000
nLs.2.1.2.g01496
Litomosoides sigmodontis
nLs.2.1.2.g01496
N
0.000
LOAG_17798
Loa loa
LOAG_17798
N
0.000
OFLC_0000481301
Onchocerca flexuosa
OFLC_0000481301
N
0.000
nOo.2.0.1.g00014
Onchocerca ochengi
nOo.2.0.1.g00014
N
0.000
WBGene00242124
Onchocerca volvulus
WBGene00242124
N
0.000
TCLT_0000154801
Thelazia callipaeda
TCLT_0000154801
N
0.000
WUBG_04020
Wuchereria bancrofti
WUBG_04020
N
0.000