Bra024419 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra024419 T267967_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAX3
M02700_2.00
Arabidopsis thaliana
SCACCTACCHCCN

NGGDGGTAGGTGS
SELEX
Mathelier et al.(2014)
MA0576.1
0.903 0.935
RAX3
M11043_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB84_01
0.903 0.935
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra024419.1-P Myb 14 62
Bra024419.1-P Myb 68 113

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

478 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ALNC14_005160 Albugo laibachii ALNC14_005160 N 0.000
ALNC14_059320 Albugo laibachii ALNC14_059320 N 0.000
ALNC14_105430 Albugo laibachii ALNC14_105430 N 0.000
cassava31881.m1 Manihot esculenta cassava31881.m1 I 0.000
estExt_fgenesh1_kg.C_18600002 Phytophthora capsici estExt_fgenesh1_kg.C_18600002 N 0.000
estExt_Genewise1.C_61306 Fragilariopsis cylindrus estExt_Genewise1.C_61306 N 0.000
estExt_Genewise1.C_840063 Physcomitrella patens estExt_Genewise1.C_840063 I 0.000
evm.TU.supercontig_50.58 Carica papaya evm.TU.supercontig_50.58 I 0.000
e_gw1.31.51.1 Fragilariopsis cylindrus e_gw1.31.51.1 N 0.000
e_gw1.56.45.1 Fragilariopsis cylindrus e_gw1.56.45.1 N 0.000
F443_12676 Phytophthora parasitica F443_12676 N 0.000
F443_17091 Phytophthora parasitica F443_17091 N 0.000
fgenesh_scip_prom.28083.184 Phytophthora lateralis fgenesh_scip_prom.28083.184 N 0.000
fgenesh_scip_prom.28083.6132 Phytophthora lateralis fgenesh_scip_prom.28083.6132 N 0.000
fgenesh_scip_prom.46568.615 Phytophthora kernoviae fgenesh_scip_prom.46568.615 N 0.000
Gorai.007G033300 Gossypium raimondii Gorai.007G033300 I 0.000
gw1.7.507.1 Phytophthora capsici gw1.7.507.1 N 0.000
HpaG805361 Hyaloperonospora arabidopsidis HpaG805361 N 0.000
HpaG812965 Hyaloperonospora arabidopsidis HpaG812965 N 0.000
maker-pag1_scaffold_1-fgenesh-gene-0.16 Pythium aphanidermatum maker-pag1_scaffold_1-fgenesh-gene-0.16 N 0.000
maker-pag1_scaffold_219-snap-gene-0.16 Pythium aphanidermatum maker-pag1_scaffold_219-snap-gene-0.16 I 0.000
maker-par_contig_3120-fgenesh-gene-0.1 Pythium arrhenomanes maker-par_contig_3120-fgenesh-gene-0.1 I 0.000
maker-par_contig_884-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_884-fgenesh-gene-0.0 N 0.000
maker-pir_contig_1488-snap-gene-0.4 Pythium irregulare maker-pir_contig_1488-snap-gene-0.4 N 0.000
maker-pir_contig_16-fgenesh-gene-0.1 Pythium irregulare maker-pir_contig_16-fgenesh-gene-0.1 N 0.000
maker-piw_contig_424-fgenesh-gene-0.5 Pythium iwayamai maker-piw_contig_424-fgenesh-gene-0.5 N 0.000
Phatr3_J33380 Phaeodactylum tricornutum Phatr3_J33380 N 0.000
Phatr3_J33622 Phaeodactylum tricornutum Phatr3_J33622 N 0.000
Phatr3_J34724 Phaeodactylum tricornutum Phatr3_J34724 N 0.000
Phatr3_J42824 Phaeodactylum tricornutum Phatr3_J42824 N 0.000
Phatr3_J44029 Phaeodactylum tricornutum Phatr3_J44029 N 0.000
HSF3 Phaeodactylum tricornutum Phatr3_J44200 N 0.000
Phatr3_J45112 Phaeodactylum tricornutum Phatr3_J45112 N 0.000
Phyra78686 Phytophthora ramorum Phyra78686 N 0.000
Phyra79919 Phytophthora ramorum Phyra79919 N 0.000
Physo135389 Phytophthora sojae Physo135389 N 0.000
Physo157297 Phytophthora sojae Physo157297 N 0.000
PITG_06935 Phytophthora infestans PITG_06935 N 0.000
PITG_08199 Phytophthora infestans PITG_08199 N 0.000
Pm010169 Prunus mume Pm010169 I 0.000
POPTR_0004s04260 Populus trichocarpa POPTR_0004s04260 I 0.000
PYU1_G011054 Pythium ultimum PYU1_G011054 N 0.000
PYU1_G014028 Pythium ultimum PYU1_G014028 N 0.000
SapurV1A.0012s0230 Salix purpurea SapurV1A.0012s0230 I 0.000
SapurV1A.3168s0020 Salix purpurea SapurV1A.3168s0020 I 0.000
SPRG_00754 Saprolegnia parasitica SPRG_00754 N 0.000
SPRG_01593 Saprolegnia parasitica SPRG_01593 I 0.000
SPRG_08046 Saprolegnia parasitica SPRG_08046 N 0.000
Thaps22124 Thalassiosira pseudonana Thaps22124 N 0.000
Thaps24112 Thalassiosira pseudonana Thaps24112 N 0.000
Thaps269474 Thalassiosira pseudonana Thaps269474 N 0.000
Thaps4315 Thalassiosira pseudonana Thaps4315 N 0.000
VIT_10s0597g00050 Vitis vinifera VIT_10s0597g00050 I 0.000