CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra024760
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra024760
T267972_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB116
M07014_2.00
Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN
Dap-seq
OMalley et al.(2016)
MYB116_col_a
0.766
0.927
MYB116
M07015_2.00
Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND
Dap-seq
OMalley et al.(2016)
MYB116_colamp_a
0.766
0.927
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.761
0.878
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.761
0.878
MYB05_ANTMA
M11067_2.00
Antirrhinum majus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB305_Q3
0.681
0.793
MYB108
M07065_2.00
Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY
Dap-seq
OMalley et al.(2016)
BOS1_col_a
0.670
0.768
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra024760.1-P
Myb
16
63
KGPWTLEEDTILTNYISHNGEGRWNVLAKSSGLKRKGKSCRLRWLNYL
Bra024760.1-P
Myb
69
103
RGNLTPQEQLLILELHCQWGNRTDNEIKNYWRTRV
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
311 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ALNC14_122900
Albugo laibachii
ALNC14_122900
N
0.000
ALNC14_090760
Albugo laibachii
ALNC14_090760
N
0.000
ALNC14_066630
Albugo laibachii
ALNC14_066630
N
0.000
HpaG810973
Hyaloperonospora arabidopsidis
HpaG810973
N
0.000
HpaG808860
Hyaloperonospora arabidopsidis
HpaG808860
N
0.000
estExt_fgenesh1_kg.C_10721
Phytophthora capsici
estExt_fgenesh1_kg.C_10721
N
0.000
estExt_fgenesh1_kg.C_21048
Phytophthora capsici
estExt_fgenesh1_kg.C_21048
N
0.000
e_gw1.457.7.1
Phytophthora capsici
e_gw1.457.7.1
N
0.000
estExt_fgenesh1_kg.C_21051
Phytophthora capsici
estExt_fgenesh1_kg.C_21051
N
0.000
estExt_fgenesh1_pg.C_230105
Phytophthora capsici
estExt_fgenesh1_pg.C_230105
N
0.000
PITG_14513
Phytophthora infestans
PITG_14513
N
0.000
PITG_04694
Phytophthora infestans
PITG_04694
N
0.000
PITG_03306
Phytophthora infestans
PITG_03306
N
0.000
PITG_20646
Phytophthora infestans
PITG_20646
N
0.000
PITG_20647
Phytophthora infestans
PITG_20647
N
0.000
PITG_22459
Phytophthora infestans
PITG_22459
N
0.000
PITG_11760
Phytophthora infestans
PITG_11760
N
0.000
PITG_14514
Phytophthora infestans
PITG_14514
N
0.000
fgenesh_scip_prom.46568.8093
Phytophthora kernoviae
fgenesh_scip_prom.46568.8093
N
0.000
fgenesh_scip_prom.46568.8092
Phytophthora kernoviae
fgenesh_scip_prom.46568.8092
N
0.000
fgenesh_scip_prom.46568.1669
Phytophthora kernoviae
fgenesh_scip_prom.46568.1669
N
0.000
fgenesh_scip_prom.46568.3588
Phytophthora kernoviae
fgenesh_scip_prom.46568.3588
N
0.000
fgenesh_scip_prom.28083.4438
Phytophthora lateralis
fgenesh_scip_prom.28083.4438
N
0.000
fgenesh_scip_prom.28083.4437
Phytophthora lateralis
fgenesh_scip_prom.28083.4437
N
0.000
F443_15766
Phytophthora parasitica
F443_15766
N
0.000
F443_18703
Phytophthora parasitica
F443_18703
N
0.000
F443_03190
Phytophthora parasitica
F443_03190
N
0.000
F443_15811
Phytophthora parasitica
F443_15811
N
0.000
F443_18702
Phytophthora parasitica
F443_18702
N
0.000
Phyra95869
Phytophthora ramorum
Phyra95869
N
0.000
Phyra73275
Phytophthora ramorum
Phyra73275
N
0.000
Phyra80975
Phytophthora ramorum
Phyra80975
N
0.000
Phyra84925
Phytophthora ramorum
Phyra84925
N
0.000
Physo142192
Phytophthora sojae
Physo142192
N
0.000
Physo131272
Phytophthora sojae
Physo131272
N
0.000
Physo134018
Phytophthora sojae
Physo134018
N
0.000
Physo134258
Phytophthora sojae
Physo134258
N
0.000
Physo134017
Phytophthora sojae
Physo134017
N
0.000
Physo144764
Phytophthora sojae
Physo144764
N
0.000
maker-pag1_scaffold_287-snap-gene-0.16
Pythium aphanidermatum
maker-pag1_scaffold_287-snap-gene-0.16
N
0.000
maker-pag1_scaffold_183-snap-gene-0.28
Pythium aphanidermatum
maker-pag1_scaffold_183-snap-gene-0.28
N
0.000
maker-pag1_scaffold_1127-snap-gene-0.1
Pythium aphanidermatum
maker-pag1_scaffold_1127-snap-gene-0.1
I
0.000
maker-pag1_scaffold_440-fgenesh-gene-0.4
Pythium aphanidermatum
maker-pag1_scaffold_440-fgenesh-gene-0.4
N
0.000
maker-par_contig_1213-fgenesh-gene-0.2
Pythium arrhenomanes
maker-par_contig_1213-fgenesh-gene-0.2
N
0.000
maker-par_contig_1213-fgenesh-gene-0.0
Pythium arrhenomanes
maker-par_contig_1213-fgenesh-gene-0.0
N
0.000
fgenesh-pir_contig_580-abinit-gene-0.31
Pythium irregulare
fgenesh-pir_contig_580-abinit-gene-0.31
N
0.000
maker-pir_contig_698-fgenesh-gene-0.1
Pythium irregulare
maker-pir_contig_698-fgenesh-gene-0.1
N
0.000
maker-pir_contig_320-snap-gene-0.13
Pythium irregulare
maker-pir_contig_320-snap-gene-0.13
N
0.000
maker-pir_contig_2-fgenesh-gene-0.32
Pythium irregulare
maker-pir_contig_2-fgenesh-gene-0.32
N
0.000
maker-pir_contig_551-fgenesh-gene-0.4
Pythium irregulare
maker-pir_contig_551-fgenesh-gene-0.4
N
0.000
maker-pir_contig_85-snap-gene-0.26
Pythium irregulare
maker-pir_contig_85-snap-gene-0.26
N
0.000
maker-piw_contig_207-snap-gene-0.13
Pythium iwayamai
maker-piw_contig_207-snap-gene-0.13
N
0.000
maker-piw_contig_3132-fgenesh-gene-0.1
Pythium iwayamai
maker-piw_contig_3132-fgenesh-gene-0.1
N
0.000
maker-piw_contig_372-fgenesh-gene-0.4
Pythium iwayamai
maker-piw_contig_372-fgenesh-gene-0.4
N
0.000
PYU1_G009787
Pythium ultimum
PYU1_G009787
N
0.000
PYU1_G013874
Pythium ultimum
PYU1_G013874
N
0.000
PYU1_G013875
Pythium ultimum
PYU1_G013875
N
0.000
PYU1_G003405
Pythium ultimum
PYU1_G003405
N
0.000
PYU1_G000710
Pythium ultimum
PYU1_G000710
N
0.000
PYU1_G007450
Pythium ultimum
PYU1_G007450
N
0.000
maker-pve_contig_1305-fgenesh-gene-0.0
Pythium vexans
maker-pve_contig_1305-fgenesh-gene-0.0
N
0.000
maker-pve_contig_642-fgenesh-gene-0.1
Pythium vexans
maker-pve_contig_642-fgenesh-gene-0.1
N
0.000
maker-pve_contig_642-fgenesh-gene-0.5
Pythium vexans
maker-pve_contig_642-fgenesh-gene-0.5
N
0.000
maker-pve_contig_835-fgenesh-gene-0.1
Pythium vexans
maker-pve_contig_835-fgenesh-gene-0.1
N
0.000
SPRG_00586
Saprolegnia parasitica
SPRG_00586
N
0.000
SPRG_09686
Saprolegnia parasitica
SPRG_09686
N
0.000
SPRG_03693
Saprolegnia parasitica
SPRG_03693
N
0.000
SPRG_01018
Saprolegnia parasitica
SPRG_01018
N
0.000